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AI & ML interests

Democratizing machine learning in healthcare, biomedicine, and the life sciences.

Recent Activity

minwoosun authored a paper 11 days ago

Project Imaging-X: A Survey of 1000+ Open-Access Medical Imaging Datasets for Foundation Model Development

minwoosun authored a paper 6 months ago

No Tokens Wasted: Leveraging Long Context in Biomedical Vision-Language Models

cyrilzakka authored a paper 10 months ago

MammoGANesis: Controlled Generation of High-Resolution Mammograms for Radiology Education

View all activity

hf4h 's collections 12

Clinical Language Models

Some of my favorite clinical language models

Runtime error

Agents

Featured

97

Explore Clinical & Biomedical Language Models

🗺

97
emilyalsentzer/Bio_ClinicalBERT

Fill-Mask • Updated Dec 3, 2024 • 2.2M • • 427
Publicly Available Clinical BERT Embeddings

Paper • 1904.03323 • Published Apr 6, 2019 • 2
Clinical Camel: An Open-Source Expert-Level Medical Language Model with Dialogue-Based Knowledge Encoding

Paper • 2305.12031 • Published May 19, 2023 • 5

Biology Models

Some of my favorite biology models 🧬

Runtime error

Agents

23

Explore Biology & Biochem Foundation Models

🧬

23
ElnaggarLab/ankh-large

Updated Dec 18, 2023 • 3.78k • 14
facebook/esm1b_t33_650M_UR50S

Fill-Mask • Updated Dec 2, 2022 • 4.78k • • 22
facebook/esm2_t33_650M_UR50D

Fill-Mask • 0.7B • Updated Mar 21, 2023 • 1.95M • • 77

Biomedical Computer Vision Models

Some of my favorite biomedical computer vision models 🩻

wanglab/medsam-vit-base

Mask Generation • Updated May 3, 2023 • 2.14k • 24
Build error

Agents

Featured

55

Brain Diffusion

🏢

55
SinKove/synthetic_chest_xray

Updated Sep 14, 2023 • 9 • 10
chaoyi-wu/RadFM

Updated Aug 31, 2023 • 20

Biomedical Vision-Language Models (VLMs)

Some of my favorite biomedical vision-language models

med-flamingo/med-flamingo

Updated Aug 1, 2023 • 57
microsoft/BiomedCLIP-PubMedBERT_256-vit_base_patch16_224

Zero-Shot Image Classification • Updated Jan 14, 2025 • 854k • 395
vinid/plip

Zero-Shot Image Classification • Updated Mar 31, 2023 • 176k • 55
Running

34

Webplip

📈

34

Generate images from text and transform images

Synthetic Medical Data and Models

Runtime error

4

GANcMRI

🌍

4
SinKove/synthetic_mammography_csaw

Preview • Updated Oct 11, 2023 • 4 • 19
starmpcc/Asclepius-Synthetic-Clinical-Notes

Viewer • Updated Jun 14, 2024 • 158k • 355 • 110
didsr/msynth

Updated Apr 10, 2024 • 27 • 4

Educational Resources for Medical LLMs

Curated medical LLM datasets and models for use in curricular content, particularly for medical professionals (e.g. medical students).

zhengyun21/PMC-Patients

Updated Dec 10, 2024 • 506 • 143
epfl-llm/guidelines

Viewer • Updated Mar 7, 2024 • 38k • 1.28k • 149
Ahren09/XLingHealth

Viewer • Updated Mar 30, 2024 • 16k • 6 • 3
medalpaca/medical_meadow_usmle_self_assessment

Preview • Updated Apr 7, 2023 • 27 • 4

AI in Biology Demos

Some of our favorite demos showcasing applications of AI in biology and biochemistry

Running on T4

Agents

Featured

108

PROTEIN GENERATOR

🧪

108

Generate novel protein structures and sequences with diffusion
Sleeping

166

ProteinMPNN

⚡

166

Design protein sequences from structures
Runtime error

Agents

Featured

66

Diffdock

🐠

66

Predict and visualize molecular docking poses
Runtime error

Agents

10

Esmfold

⚡

10

Biochemistry Models

Some of my favorite biochemistry models 🧪

Runtime error

Agents

23

Explore Biology & Biochem Foundation Models

🧬

23
seyonec/ChemBERTa-zinc-base-v1

Fill-Mask • Updated May 20, 2021 • 89.4k • • 62
ncfrey/ChemGPT-1.2B

Text Generation • Updated Jun 15, 2022 • 2.69k • 16
liyuesen/druggpt

Text Generation • Updated Jul 1, 2023 • 2.77k • 23

Biomedical Language Models

Runtime error

Agents

Featured

97

Explore Clinical & Biomedical Language Models

🗺

97
EMBO/BioMegatron345mUncased

Updated Jul 26, 2022 • 31 • 11
microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext

Fill-Mask • Updated Nov 6, 2023 • 350k • • 322
microsoft/BioGPT-Large

Text Generation • Updated Feb 5, 2023 • 6.15k • 239

Privacy-Preserving Biomedical ML

Runtime error

Agents

Featured

60

Federated Learning with Substra

🌍

60
StanfordAIMI/stanford-deidentifier-base

Token Classification • Updated Oct 9, 2024 • 1.37M • • 80
Runtime error

Agents

39

Medical Note Deidentification

🐠

39

De-identify medical notes by removing private information
obi/deid_bert_i2b2

Token Classification • Updated Aug 22, 2022 • 3.67k • 23

Biomedical Demos

Some of my favorite biomedical demos

Runtime error

Agents

Featured

60

Federated Learning with Substra

🌍

60
Build error

Agents

Featured

55

Brain Diffusion

🏢

55
Running

Agents

32

Chest x-ray HybridGNet Segmentation

⚡

32

Segment chest X-rays to identify lungs and heart
Sleeping

Agents

4

Face Deid Ct

🏢

4

Remove faces from DICOM files in a ZIP

Surgical Datasets

A collection of high-quality surgical datasets for machine learning.

UCL-WEISS/PitVis-2023

Preview • Updated Sep 17, 2024 • 94 • 1

Clinical Language Models

Some of my favorite clinical language models

Runtime error

Agents

Featured

97

Explore Clinical & Biomedical Language Models

🗺

97
emilyalsentzer/Bio_ClinicalBERT

Fill-Mask • Updated Dec 3, 2024 • 2.2M • • 427
Publicly Available Clinical BERT Embeddings

Paper • 1904.03323 • Published Apr 6, 2019 • 2
Clinical Camel: An Open-Source Expert-Level Medical Language Model with Dialogue-Based Knowledge Encoding

Paper • 2305.12031 • Published May 19, 2023 • 5

AI in Biology Demos

Some of our favorite demos showcasing applications of AI in biology and biochemistry

Running on T4

Agents

Featured

108

PROTEIN GENERATOR

🧪

108

Generate novel protein structures and sequences with diffusion
Sleeping

166

ProteinMPNN

⚡

166

Design protein sequences from structures
Runtime error

Agents

Featured

66

Diffdock

🐠

66

Predict and visualize molecular docking poses
Runtime error

Agents

10

Esmfold

⚡

10

Biology Models

Some of my favorite biology models 🧬

Runtime error

Agents

23

Explore Biology & Biochem Foundation Models

🧬

23
ElnaggarLab/ankh-large

Updated Dec 18, 2023 • 3.78k • 14
facebook/esm1b_t33_650M_UR50S

Fill-Mask • Updated Dec 2, 2022 • 4.78k • • 22
facebook/esm2_t33_650M_UR50D

Fill-Mask • 0.7B • Updated Mar 21, 2023 • 1.95M • • 77

Biochemistry Models

Some of my favorite biochemistry models 🧪

Runtime error

Agents

23

Explore Biology & Biochem Foundation Models

🧬

23
seyonec/ChemBERTa-zinc-base-v1

Fill-Mask • Updated May 20, 2021 • 89.4k • • 62
ncfrey/ChemGPT-1.2B

Text Generation • Updated Jun 15, 2022 • 2.69k • 16
liyuesen/druggpt

Text Generation • Updated Jul 1, 2023 • 2.77k • 23

Biomedical Computer Vision Models

Some of my favorite biomedical computer vision models 🩻

wanglab/medsam-vit-base

Mask Generation • Updated May 3, 2023 • 2.14k • 24
Build error

Agents

Featured

55

Brain Diffusion

🏢

55
SinKove/synthetic_chest_xray

Updated Sep 14, 2023 • 9 • 10
chaoyi-wu/RadFM

Updated Aug 31, 2023 • 20

Biomedical Language Models

Runtime error

Agents

Featured

97

Explore Clinical & Biomedical Language Models

🗺

97
EMBO/BioMegatron345mUncased

Updated Jul 26, 2022 • 31 • 11
microsoft/BiomedNLP-BiomedBERT-base-uncased-abstract-fulltext

Fill-Mask • Updated Nov 6, 2023 • 350k • • 322
microsoft/BioGPT-Large

Text Generation • Updated Feb 5, 2023 • 6.15k • 239

Biomedical Vision-Language Models (VLMs)

Some of my favorite biomedical vision-language models

med-flamingo/med-flamingo

Updated Aug 1, 2023 • 57
microsoft/BiomedCLIP-PubMedBERT_256-vit_base_patch16_224

Zero-Shot Image Classification • Updated Jan 14, 2025 • 854k • 395
vinid/plip

Zero-Shot Image Classification • Updated Mar 31, 2023 • 176k • 55
Running

34

Webplip

📈

34

Generate images from text and transform images

Privacy-Preserving Biomedical ML

Runtime error

Agents

Featured

60

Federated Learning with Substra

🌍

60
StanfordAIMI/stanford-deidentifier-base

Token Classification • Updated Oct 9, 2024 • 1.37M • • 80
Runtime error

Agents

39

Medical Note Deidentification

🐠

39

De-identify medical notes by removing private information
obi/deid_bert_i2b2

Token Classification • Updated Aug 22, 2022 • 3.67k • 23

Synthetic Medical Data and Models

Runtime error

4

GANcMRI

🌍

4
SinKove/synthetic_mammography_csaw

Preview • Updated Oct 11, 2023 • 4 • 19
starmpcc/Asclepius-Synthetic-Clinical-Notes

Viewer • Updated Jun 14, 2024 • 158k • 355 • 110
didsr/msynth

Updated Apr 10, 2024 • 27 • 4

Biomedical Demos

Some of my favorite biomedical demos

Runtime error

Agents

Featured

60

Federated Learning with Substra

🌍

60
Build error

Agents

Featured

55

Brain Diffusion

🏢

55
Running

Agents

32

Chest x-ray HybridGNet Segmentation

⚡

32

Segment chest X-rays to identify lungs and heart
Sleeping

Agents

4

Face Deid Ct

🏢

4

Remove faces from DICOM files in a ZIP

Educational Resources for Medical LLMs

Curated medical LLM datasets and models for use in curricular content, particularly for medical professionals (e.g. medical students).

zhengyun21/PMC-Patients

Updated Dec 10, 2024 • 506 • 143
epfl-llm/guidelines

Viewer • Updated Mar 7, 2024 • 38k • 1.28k • 149
Ahren09/XLingHealth

Viewer • Updated Mar 30, 2024 • 16k • 6 • 3
medalpaca/medical_meadow_usmle_self_assessment

Preview • Updated Apr 7, 2023 • 27 • 4

Surgical Datasets

A collection of high-quality surgical datasets for machine learning.

UCL-WEISS/PitVis-2023

Preview • Updated Sep 17, 2024 • 94 • 1

AI & ML interests

Recent Activity

Team members 4

hf4h 's collections 12

Explore Clinical & Biomedical Language Models

Explore Biology & Biochem Foundation Models

Brain Diffusion

Webplip

GANcMRI

PROTEIN GENERATOR

ProteinMPNN

Diffdock

Esmfold

Explore Biology & Biochem Foundation Models

Explore Clinical & Biomedical Language Models

Federated Learning with Substra

Medical Note Deidentification

Federated Learning with Substra

Brain Diffusion

Chest x-ray HybridGNet Segmentation

Face Deid Ct

Explore Clinical & Biomedical Language Models

PROTEIN GENERATOR

ProteinMPNN

Diffdock

Esmfold

Explore Biology & Biochem Foundation Models

Explore Biology & Biochem Foundation Models

Brain Diffusion

Explore Clinical & Biomedical Language Models

Webplip

Federated Learning with Substra

Medical Note Deidentification

GANcMRI

Federated Learning with Substra

Brain Diffusion

Chest x-ray HybridGNet Segmentation

Face Deid Ct