input stringlengths 205 73.3k | output stringlengths 64 73.2k | instruction stringclasses 1
value |
|---|---|---|
#vulnerable code
@Test
public void publicResourceHandlerTest() throws URISyntaxException {
PublicResourceHandler handler = new PublicResourceHandler();
URL resourceUrl = handler.getResourceUrl("VISIBLE");
assertNotNull(resourceUrl);
Path visibleFile ... | #fixed code
@Test
public void publicResourceHandlerTest() throws URISyntaxException {
PublicResourceHandler handler = new PublicResourceHandler();
URL resourceUrl = handler.getResourceUrl("VISIBLE");
assertNotNull(resourceUrl);
Path visibleFile = Path... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public String injectVersion(String resourcePath) {
URL resourceUrl = getResourceUrl(resourcePath);
try {
long lastModified = resourceUrl.openConnection().getLastModified();
// check for extension
int extensionAt = res... | #fixed code
public String injectVersion(String resourcePath) {
String version = getResourceVersion(resourcePath);
if (StringUtils.isNullOrEmpty(version)) {
// unversioned, pass-through resource path
return resourcePath;
}
// check ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
String buildRealData(final ConditionZkDTO condition, final ServerWebExchange exchange) {
String realData = "";
if (condition.getParamType().equals(ParamTypeEnum.QUERY.getName())) {
final MultiValueMap<String, String> queryParams = exchange.ge... | #fixed code
String buildRealData(final ConditionZkDTO condition, final ServerWebExchange exchange) {
String realData = "";
if (condition.getParamType().equals(ParamTypeEnum.QUERY.getName())) {
final MultiValueMap<String, String> queryParams = exchange.getReque... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void roundRobinLoadBalanceTest() {
List<DivideUpstream> divideUpstreamList =
Arrays.asList(50, 20, 30).stream()
.map(weight -> {
DivideUpstream divideUpstream = new DivideUpstr... | #fixed code
@Test
public void roundRobinLoadBalanceTest() {
List<DivideUpstream> divideUpstreamList =
Stream.of(50, 20, 30)
.map(weight -> {
DivideUpstream divideUpstream = new DivideUpstream();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void premain(String agentArgument, Instrumentation instrumentation) throws Exception {
String[] args = agentArgument.split(":");
if (args.length < 2 || args.length > 3) {
System.err.println("Usage: -javaagent:/path/to/JavaAgent.jar=[host:]<... | #fixed code
public static void premain(String agentArgument, Instrumentation instrumentation) throws Exception {
String[] args = agentArgument.split(":");
if (args.length < 2 || args.length > 3) {
System.err.println("Usage: -javaagent:/path/to/JavaAgent.jar=[host:]<port>:... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void agentLoads() throws IOException, InterruptedException {
// If not starting the testcase via Maven, set the buildDirectory and finalName system properties manually.
final String buildDirectory = (String) System.getProperties().get("b... | #fixed code
@Test
public void agentLoads() throws IOException, InterruptedException {
// If not starting the testcase via Maven, set the buildDirectory and finalName system properties manually.
final String buildDirectory = (String) System.getProperties().get("buildDi... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void main(String[] args) throws Exception {
if (args.length < 2) {
System.err.println("Usage: WebServer <port> <yaml configuration file>");
System.exit(1);
}
JmxCollector jc = new JmxCollector(new FileReader(args[1])).register()... | #fixed code
public static void main(String[] args) throws Exception {
if (args.length < 2) {
System.err.println("Usage: WebServer <port> <yaml configuration file>");
System.exit(1);
}
JmxCollector jc = new JmxCollector(new File(args[1])).register();
int ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void agentLoads() throws IOException, InterruptedException {
// If not starting the testcase via Maven, set the buildDirectory and finalName system properties manually.
final String buildDirectory = (String) System.getProperties().get("b... | #fixed code
@Test
public void agentLoads() throws IOException, InterruptedException {
// If not starting the testcase via Maven, set the buildDirectory and finalName system properties manually.
final String buildDirectory = (String) System.getProperties().get("buildDi... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void agentLoads() throws IOException, InterruptedException {
// If not starting the testcase via Maven, set the buildDirectory and finalName system properties manually.
final String buildDirectory = (String) System.getProperties().get("b... | #fixed code
@Test
public void agentLoads() throws IOException, InterruptedException {
// If not starting the testcase via Maven, set the buildDirectory and finalName system properties manually.
final String buildDirectory = (String) System.getProperties().get("buildDi... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void premain(String agentArgument, Instrumentation instrumentation) throws Exception {
String[] args = agentArgument.split(":");
if (args.length < 2 || args.length > 3) {
System.err.println("Usage: -javaagent:/path/to/JavaAgent.jar=[host:]<... | #fixed code
public static void premain(String agentArgument, Instrumentation instrumentation) throws Exception {
String[] args = agentArgument.split(":");
if (args.length < 2 || args.length > 3) {
System.err.println("Usage: -javaagent:/path/to/JavaAgent.jar=[host:]<port>:... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public static void premain(String agentArgument, Instrumentation instrumentation) throws Exception {
String[] args = agentArgument.split(":");
if (args.length < 2 || args.length > 3) {
System.err.println("Usage: -javaagent:/path/to/JavaAgent.jar=[host:]<... | #fixed code
public static void premain(String agentArgument, Instrumentation instrumentation) throws Exception {
String[] args = agentArgument.split(":");
if (args.length < 2 || args.length > 3) {
System.err.println("Usage: -javaagent:/path/to/JavaAgent.jar=[host:]<port>:... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@BeforeClass
public static void beforeClass() {
for (File file : customFileLog("").listFiles()) {
if (file.getPath().contains("tracer-self.log") || file.getPath().contains("sync.log")
|| file.getPath().contains("rpc-profile.log")
... | #fixed code
@BeforeClass
public static void beforeClass() {
File[] traceFiles = customFileLog("").listFiles();
if (traceFiles == null) {
return;
}
for (File file : traceFiles) {
if (file.getPath().contains("tracer-self.log") || ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected Map<String, Object> customSettingsFlat() {
return ImmutableMap.<String, Object>builder()
.put(HTTP_INCOMING_AUTH_TYPE, IlpOverHttpLinkSettings.AuthType.JWT_HS_256.name())
.put(HTTP_INCOMING_TOKEN_ISSUER, "https://incoming-issuer.example.com/"... | #fixed code
protected Map<String, Object> customSettingsFlat() {
return customSettingsFlat(IlpOverHttpLinkSettings.AuthType.JWT_HS_256, IlpOverHttpLinkSettings.AuthType.JWT_HS_256);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public Node<S> next() {
// Take the next node from the stack.
Node<S> current = popUnvisited();
// Take the associated state
S currentState = current.transition().to();
// Explore the adjacent neighbors
for(Transition<S> s... | #fixed code
public Node<S> next(){
if (next != null){
Node<S> e = next;
next = nextUnvisited();
return e;
} else {
return nextUnvisited();
}
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public GraphEdge<V,E> connect(V v1, V v2, E value){
//check input
if(v1 == null || v2 == null) throw new IllegalArgumentException("Vertices cannot be null");
GraphEdge<V,E> edge = new GraphEdge<V, E>(v1, v2, value);
GraphEdge<V,E> edgeRev... | #fixed code
public GraphEdge<V,E> connect(V v1, V v2, E value){
// Check non-null arguments
if(v1 == null || v2 == null) throw new IllegalArgumentException("Vertices cannot be null");
// Ensure that the vertices are in the graph
add(v1);
add(v2);
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void test() {
String[] testMaze = {
"XX@XXXXXXXXXXXXXXXXXXXXXXXXXXXXX",
"XX XXXXXXXXXXXXX XXXXXXXXXXX",
"XX XXXXXXXXXX XXX XX XXXX",
"XXXXX XXXXXX XXX XX XXX XXXX",
"XXX ... | #fixed code
@Test
public void test() {
String[] testMaze = {
"XX@XXXXXXXXXXXXXXXXXXXXXXXXXXXXX",
"XX XXXXXXXXXXXXX XXXXXXXXXXX",
"XX XXXXXXXXXX XXX XX XXXX",
"XXXXX XXXXXX XXX XX XXX XXXX",
"XXX XX XXX... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public GraphEdge<V,E> connect(V v1, V v2, E value){
//check input
if(v1 == null || v2 == null) throw new IllegalArgumentException("Vertices cannot be null");
GraphEdge<V,E> edge = new GraphEdge<V, E>(v1, v2, value);
GraphEdge<V,E> edgeRev... | #fixed code
public GraphEdge<V,E> connect(V v1, V v2, E value){
// Check non-null arguments
if(v1 == null || v2 == null) throw new IllegalArgumentException("Vertices cannot be null");
// Ensure that the vertices are in the graph
add(v1);
add(v2);
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void benchmark() throws InterruptedException {
System.out.println("Maze | Hipster-Dijkstra (ms) | JUNG-Dijkstra (ms)");
System.out.println("-------------------------------------------------");
final int times = 5;
for (in... | #fixed code
@Test
public void benchmark() throws InterruptedException {
Benchmark bench = new Benchmark();
// Hipster-Dijkstra
bench.add("Hipster-Dijkstra", new Algorithm() {
AStar<Point> it; Maze2D maze;
public void initialize(Maze2D maz... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testRestartAuditorBookieAfterCrashing() throws Exception {
BookieServer auditor = verifyAuditor();
shudownBookie(auditor);
// restarting Bookie with same configurations.
int indexOfDownBookie = bs.indexOf(auditor);... | #fixed code
@Test
public void testRestartAuditorBookieAfterCrashing() throws Exception {
BookieServer auditor = verifyAuditor();
shudownBookie(auditor);
// restarting Bookie with same configurations.
int indexOfDownBookie = bs.indexOf(auditor);
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void handleSubscribeMessage(PubSubResponse response) {
if (logger.isDebugEnabled())
logger.debug("Handling a Subscribe message in response: " + response + ", topic: "
+ origSubData.topic.toStringUtf8() + ", subscriberI... | #fixed code
public void handleSubscribeMessage(PubSubResponse response) {
if (logger.isDebugEnabled()) {
logger.debug("Handling a Subscribe message in response: {}, topic: {}, subscriberId: {}",
new Object[] { response, getOrigSubData().topic.toStr... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void close() {
synchronized (this) {
state = ConnectionState.DISCONNECTED;
}
if (channel != null) {
channel.close().awaitUninterruptibly();
}
if (readTimeoutTimer != null) {
readTimeoutTi... | #fixed code
public void close() {
closeInternal(true);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void run() {
while (running) {
synchronized (this) {
try {
wait(gcWaitTime);
} catch (InterruptedException e) {
Thread.currentThread().interrupt();
... | #fixed code
@Override
public void run() {
while (running) {
synchronized (this) {
try {
wait(gcWaitTime);
} catch (InterruptedException e) {
Thread.currentThread().interrupt();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public byte[] readMasterKey(long ledgerId) throws IOException, BookieException {
synchronized(fileInfoCache) {
FileInfo fi = fileInfoCache.get(ledgerId);
if (fi == null) {
File lf = findIndexFile(ledgerId);
... | #fixed code
@Override
public byte[] readMasterKey(long ledgerId) throws IOException, BookieException {
synchronized(fileInfoCache) {
FileInfo fi = fileInfoCache.get(ledgerId);
if (fi == null) {
File lf = findIndexFile(ledgerId);
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void writeIndexFileForLedger(File indexDir, long ledgerId,
byte[] masterKey)
throws Exception {
File fn = new File(indexDir, LedgerCache.getLedgerName(ledgerId));
fn.getParentFile().mkdirs();
... | #fixed code
private void writeIndexFileForLedger(File indexDir, long ledgerId,
byte[] masterKey)
throws Exception {
File fn = new File(indexDir, LedgerCache.getLedgerName(ledgerId));
fn.getParentFile().mkdirs();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void channelDisconnected(ChannelHandlerContext ctx, ChannelStateEvent e) throws Exception {
LOG.info("Disconnected from bookie: " + addr);
errorOutOutstandingEntries();
channel.close();
state = ConnectionState.DISCONN... | #fixed code
@Override
public void channelDisconnected(ChannelHandlerContext ctx, ChannelStateEvent e) throws Exception {
LOG.info("Disconnected from bookie: " + addr);
errorOutOutstandingEntries();
channel.close();
synchronized (this) {
sta... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testReadWriteSyncSingleClient() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test
public void testReadWriteSyncSingleClient() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test(timeout=60000)
public void testLastConfirmedAdd() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test(timeout=60000)
public void testLastConfirmedAdd() throws Exception {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testSyncReadAsyncWriteStringsSingleClient() throws IOException {
LOG.info("TEST READ WRITE STRINGS MIXED SINGLE CLIENT");
String charset = "utf-8";
LOG.debug("Default charset: " + Charset.defaultCharset());
try {
... | #fixed code
@Test
public void testSyncReadAsyncWriteStringsSingleClient() throws IOException {
SyncObj sync = new SyncObj();
LOG.info("TEST READ WRITE STRINGS MIXED SINGLE CLIENT");
String charset = "utf-8";
LOG.debug("Default charset: " + Charset.defa... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void close() {
synchronized (this) {
state = ConnectionState.DISCONNECTED;
}
if (channel != null) {
channel.close().awaitUninterruptibly();
}
if (readTimeoutTimer != null) {
readTimeoutTi... | #fixed code
public void close() {
closeInternal(true);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
if(rc != BKException.Code.OK) fail("Return code is not OK: " + rc);
ls = seq;
synchronized (sync) {
sync.value = true;
... | #fixed code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
SyncObj sync = (SyncObj) ctx;
sync.setLedgerEntries(seq);
sync.setReturnCode(rc);
synchronized (sync) {
sync.value = true;
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public StatsLogger getStatsLogger(String name) {
initIfNecessary();
return new CodahaleStatsLogger(metrics, name);
}
#location 4
#vulnerability type THREAD_SAFETY_VIOLATION | #fixed code
@Override
public StatsLogger getStatsLogger(String name) {
initIfNecessary();
return new CodahaleStatsLogger(getMetrics(), name);
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
FileInfo getFileInfo(Long ledger, byte masterKey[]) throws IOException {
synchronized(fileInfoCache) {
FileInfo fi = fileInfoCache.get(ledger);
if (fi == null) {
File lf = findIndexFile(ledger);
if (lf == n... | #fixed code
FileInfo getFileInfo(Long ledger, byte masterKey[]) throws IOException {
synchronized(fileInfoCache) {
FileInfo fi = fileInfoCache.get(ledger);
if (fi == null) {
File lf = findIndexFile(ledger);
if (lf == null) {... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public String toString() {
StringBuilder sb = new StringBuilder();
sb.append("Latency min/avg/max: " + getMinLatency() + "/" + getAvgLatency() + "/" + getMaxLatency() + "\n");
sb.append("Received: " + getPacketsReceived() + "\n");
... | #fixed code
@Override
public String toString() {
StringBuilder sb = new StringBuilder();
sb.append("Latency min/avg/max: " + getMinLatency() + "/" + getAvgLatency() + "/" + getMaxLatency() + "\n");
sb.append("Received: " + getPacketsReceived() + "\n");
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
void connectIfNeededAndDoOp(GenericCallback<Void> op) {
boolean doOpNow;
// common case without lock first
if (channel != null && state == ConnectionState.CONNECTED) {
doOpNow = true;
} else {
synchronized (this)... | #fixed code
void connectIfNeededAndDoOp(GenericCallback<Void> op) {
boolean doOpNow;
synchronized (this) {
if (channel != null && state == ConnectionState.CONNECTED) {
doOpNow = true;
} else {
// if reached here, ch... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testSimpleBookieLedgerMapping() throws Exception {
LedgerManagerFactory newLedgerManagerFactory = LedgerManagerFactory
.newLedgerManagerFactory(baseConf, zkc);
LedgerManager ledgerManager = newLedgerManagerFactory
... | #fixed code
@Test
public void testSimpleBookieLedgerMapping() throws Exception {
for (int i = 0; i < numberOfLedgers; i++) {
createAndAddEntriesToLedger().close();
}
BookieLedgerIndexer bookieLedgerIndex = new BookieLedgerIndexer(
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testReadWriteZero() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
LOG.in... | #fixed code
@Test
public void testReadWriteZero() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
LOG.info("Le... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void setMessageHandler(MessageHandler messageHandler) {
if (logger.isDebugEnabled())
logger.debug("Setting the messageHandler for topic: " + origSubData.topic.toStringUtf8()
+ ", subscriberId: " + origSubData.subscribe... | #fixed code
public void setMessageHandler(MessageHandler messageHandler) {
if (logger.isDebugEnabled()) {
logger.debug("Setting the messageHandler for topic: {}, subscriberId: {}",
getOrigSubData().topic.toStringUtf8(),
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
if(rc != BKException.Code.OK) fail("Return code is not OK: " + rc);
ls = seq;
synchronized (sync) {
sync.value = true;
... | #fixed code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
SyncObj sync = (SyncObj) ctx;
sync.setLedgerEntries(seq);
sync.setReturnCode(rc);
synchronized (sync) {
sync.value = true;
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testReadWriteAsyncSingleClient() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test
public void testReadWriteAsyncSingleClient() throws IOException {
SyncObj sync = new SyncObj();
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testGarbageCollectLedgers() throws Exception {
int numLedgers = 100;
int numRemovedLedgers = 10;
final Set<Long> createdLedgers = new HashSet<Long>();
final Set<Long> removedLedgers = new HashSet<Long>();
/... | #fixed code
@Test
public void testGarbageCollectLedgers() throws Exception {
int numLedgers = 100;
int numRemovedLedgers = 10;
final Set<Long> createdLedgers = new HashSet<Long>();
final Set<Long> removedLedgers = new HashSet<Long>();
// crea... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void start(Configuration conf) {
initIfNecessary();
int metricsOutputFrequency = conf.getInt("codahaleStatsOutputFrequencySeconds", 60);
String prefix = conf.getString("codahaleStatsPrefix", "");
String graphiteHost ... | #fixed code
@Override
public void start(Configuration conf) {
initIfNecessary();
int metricsOutputFrequency = conf.getInt("codahaleStatsOutputFrequencySeconds", 60);
String prefix = conf.getString("codahaleStatsPrefix", "");
String graphiteHost = conf... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
// get back to prev value
lh.lastAddConfirmed--;
if (rc == BKException.Code.OK) {
LedgerEntry entry = seq.nextElement();
... | #fixed code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
if (rc == BKException.Code.OK) {
LedgerEntry entry = seq.nextElement();
byte[] data = entry.getEntry();
/*
* W... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected void doPublish(PubSubData pubSubData, Channel channel) {
// Create a PubSubRequest
PubSubRequest.Builder pubsubRequestBuilder = PubSubRequest.newBuilder();
pubsubRequestBuilder.setProtocolVersion(ProtocolVersion.VERSION_ONE);
pu... | #fixed code
protected void doPublish(PubSubData pubSubData, Channel channel) {
// Create a PubSubRequest
PubSubRequest.Builder pubsubRequestBuilder = PubSubRequest.newBuilder();
pubsubRequestBuilder.setProtocolVersion(ProtocolVersion.VERSION_ONE);
pubsubRe... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void setLastLogId(File dir, long logId) throws IOException {
FileOutputStream fos;
fos = new FileOutputStream(new File(dir, "lastId"));
BufferedWriter bw = new BufferedWriter(new OutputStreamWriter(fos));
try {
bw.writ... | #fixed code
private void setLastLogId(File dir, long logId) throws IOException {
FileOutputStream fos;
fos = new FileOutputStream(new File(dir, "lastId"));
BufferedWriter bw = new BufferedWriter(new OutputStreamWriter(fos));
try {
bw.write(Long... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testReadWriteRangeAsyncSingleClient() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test
public void testReadWriteRangeAsyncSingleClient() throws IOException {
SyncObj sync = new SyncObj();
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
if (rc != 0)
fail("Failed to write entry");
ls = seq;
synchronized (sync) {
sync.value = true;
sync.no... | #fixed code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
SyncObj x = (SyncObj) ctx;
if (rc != 0) {
LOG.error("Failure during add {}", rc);
x.failureOccurred = true;
}
sy... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected synchronized void messageConsumed(Message message) {
if (logger.isDebugEnabled())
logger.debug("Message has been successfully consumed by the client app for message: " + message
+ ", topic: " + origSubData.topic.toS... | #fixed code
protected synchronized void messageConsumed(Message message) {
if (logger.isDebugEnabled())
logger.debug("Message has been successfully consumed by the client app for message: " + message
+ ", topic: " + origSubData.topic.toStringU... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test(timeout=60000)
public void testReadFromOpenLedger() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId()... | #fixed code
@Test(timeout=60000)
public void testReadFromOpenLedger() throws Exception {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void processResult(int rc, String path, Object ctx, List<String> children) {
if (rc != KeeperException.Code.OK.intValue()) {
//logger.error("Error while reading bookies", KeeperException.create(Code.get(rc), path));
... | #fixed code
@Override
public void processResult(int rc, String path, Object ctx, List<String> children) {
if (rc != KeeperException.Code.OK.intValue()) {
//logger.error("Error while reading bookies", KeeperException.create(Code.get(rc), path));
// try... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testSyncReadAsyncWriteStringsSingleClient() throws IOException {
LOG.info("TEST READ WRITE STRINGS MIXED SINGLE CLIENT");
String charset = "utf-8";
LOG.debug("Default charset: " + Charset.defaultCharset());
try {
... | #fixed code
@Test
public void testSyncReadAsyncWriteStringsSingleClient() throws IOException {
SyncObj sync = new SyncObj();
LOG.info("TEST READ WRITE STRINGS MIXED SINGLE CLIENT");
String charset = "utf-8";
LOG.debug("Default charset: " + Charset.defa... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
void auxTestReadWriteAsyncSingleClient(BookieServer bs) throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(3, 2, digestType, ledgerPassword);
ledgerId = lh.getId();
LOG.info("Ledger ID: " + lh.get... | #fixed code
void auxTestReadWriteAsyncSingleClient(BookieServer bs) throws IOException {
SyncObj sync = new SyncObj();
try {
// Create a ledger
lh = bkc.createLedger(3, 2, digestType, ledgerPassword);
ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test(timeout=60000)
public void testLastConfirmedAdd() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test(timeout=60000)
public void testLastConfirmedAdd() throws Exception {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected void doPublish(PubSubData pubSubData, Channel channel) {
// Create a PubSubRequest
PubSubRequest.Builder pubsubRequestBuilder = PubSubRequest.newBuilder();
pubsubRequestBuilder.setProtocolVersion(ProtocolVersion.VERSION_ONE);
pu... | #fixed code
protected void doPublish(PubSubData pubSubData, Channel channel) {
// Create a PubSubRequest
PubSubRequest.Builder pubsubRequestBuilder = PubSubRequest.newBuilder();
pubsubRequestBuilder.setProtocolVersion(ProtocolVersion.VERSION_ONE);
pubsubRe... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private long readLastLogId(File f) {
FileInputStream fis;
try {
fis = new FileInputStream(new File(f, "lastId"));
} catch (FileNotFoundException e) {
return -1;
}
BufferedReader br = new BufferedReader(new ... | #fixed code
private long readLastLogId(File f) {
FileInputStream fis;
try {
fis = new FileInputStream(new File(f, "lastId"));
} catch (FileNotFoundException e) {
return -1;
}
BufferedReader br = new BufferedReader(new InputS... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testSyncReadAsyncWriteStringsSingleClient() throws IOException {
LOG.info("TEST READ WRITE STRINGS MIXED SINGLE CLIENT");
String charset = "utf-8";
LOG.debug("Default charset: " + Charset.defaultCharset());
try {
... | #fixed code
@Test
public void testSyncReadAsyncWriteStringsSingleClient() throws IOException {
SyncObj sync = new SyncObj();
LOG.info("TEST READ WRITE STRINGS MIXED SINGLE CLIENT");
String charset = "utf-8";
LOG.debug("Default charset: " + Charset.defa... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
// get back to prev value
lh.lastAddConfirmed--;
if (rc == BKException.Code.OK) {
LedgerEntry entry = seq.nextElement();
... | #fixed code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
if (rc == BKException.Code.OK) {
LedgerEntry entry = seq.nextElement();
byte[] data = entry.getEntry();
/*
* W... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testReadWriteRangeAsyncSingleClient() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test
public void testReadWriteRangeAsyncSingleClient() throws IOException {
SyncObj sync = new SyncObj();
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testReadWriteAsyncLength() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test
public void testReadWriteAsyncLength() throws IOException {
SyncObj sync = new SyncObj();
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
le... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void run() {
LOG.info("Running...");
long start = previous = System.currentTimeMillis();
byte messageCount = 0;
int sent = 0;
Thread reporter = new Thread() {
public void run() {
try {
... | #fixed code
public void run() {
LOG.info("Running...");
long start = previous = System.currentTimeMillis();
int sent = 0;
Thread reporter = new Thread() {
public void run() {
try {
while(true) {... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testEnsembleReformation() throws Exception {
try {
LedgerManagerFactory newLedgerManagerFactory = LedgerManagerFactory
.newLedgerManagerFactory(baseConf, zkc);
LedgerManager ledgerManager = newLed... | #fixed code
@Test
public void testEnsembleReformation() throws Exception {
try {
LedgerHandle lh1 = createAndAddEntriesToLedger();
LedgerHandle lh2 = createAndAddEntriesToLedger();
startNewBookie();
shutdownBookie(bs.size() - 2... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
void handleBookieFailure(InetSocketAddress addr, final int bookieIndex) {
InetSocketAddress newBookie;
if (LOG.isDebugEnabled()) {
LOG.debug("Handling failure of bookie: " + addr + " index: "
+ bookieIndex);
}
... | #fixed code
LedgerHandle(BookKeeper bk, long ledgerId, LedgerMetadata metadata,
DigestType digestType, byte[] password)
throws GeneralSecurityException, NumberFormatException {
this.bk = bk;
this.metadata = metadata;
if (metadata.isCl... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
private void setLastLogId(File dir, long logId) throws IOException {
FileOutputStream fos;
fos = new FileOutputStream(new File(dir, "lastId"));
BufferedWriter bw = new BufferedWriter(new OutputStreamWriter(fos));
try {
bw.writ... | #fixed code
private void setLastLogId(File dir, long logId) throws IOException {
FileOutputStream fos;
fos = new FileOutputStream(new File(dir, "lastId"));
BufferedWriter bw = new BufferedWriter(new OutputStreamWriter(fos));
try {
bw.write(Long... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
if (rc != 0)
fail("Failed to write entry");
ls = seq;
synchronized (sync) {
sync.value = true;
sync.no... | #fixed code
@Override
public void readComplete(int rc, LedgerHandle lh, Enumeration<LedgerEntry> seq, Object ctx) {
SyncObj x = (SyncObj) ctx;
if (rc != 0) {
LOG.error("Failure during add {}", rc);
x.failureOccurred = true;
}
sy... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test(timeout = 60000)
public void testWhenNoLogsToCompact() throws Exception {
tearDown(); // I dont want the test infrastructure
ServerConfiguration conf = new ServerConfiguration();
File tmpDir = File.createTempFile("bkTest", ".dir");
... | #fixed code
@Test(timeout = 60000)
public void testWhenNoLogsToCompact() throws Exception {
tearDown(); // I dont want the test infrastructure
ServerConfiguration conf = new ServerConfiguration();
File tmpDir = File.createTempFile("bkTest", ".dir");
tm... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
void handleBookieFailure(final InetSocketAddress addr, final int bookieIndex) {
InetSocketAddress newBookie;
LOG.debug("Handling failure of bookie: {} index: {}", addr, bookieIndex);
final ArrayList<InetSocketAddress> newEnsemble = new ArrayList... | #fixed code
LedgerHandle(BookKeeper bk, long ledgerId, LedgerMetadata metadata,
DigestType digestType, byte[] password)
throws GeneralSecurityException, NumberFormatException {
this.bk = bk;
this.metadata = metadata;
if (metadata.isCl... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test(timeout=60000)
public void testLastConfirmedAdd() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test(timeout=60000)
public void testLastConfirmedAdd() throws Exception {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected void compactEntryLog(long entryLogId) {
EntryLogMetadata entryLogMeta = entryLogMetaMap.get(entryLogId);
if (null == entryLogMeta) {
LOG.warn("Can't get entry log meta when compacting entry log " + entryLogId + ".");
ret... | #fixed code
protected void compactEntryLog(long entryLogId) {
EntryLogMetadata entryLogMeta = entryLogMetaMap.get(entryLogId);
if (null == entryLogMeta) {
LOG.warn("Can't get entry log meta when compacting entry log " + entryLogId + ".");
return;
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testMultiLedger() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
lh2 = bkc.createLedger(digestType, ledgerPassword);
long ledgerId = lh.getId... | #fixed code
@Test
public void testMultiLedger() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
lh2 = bkc.createLedger(digestType, ledgerPassword);
long ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
void auxTestReadWriteAsyncSingleClient(BookieServer bs) throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(3, 2, digestType, ledgerPassword);
ledgerId = lh.getId();
LOG.info("Ledger ID: " + lh.get... | #fixed code
void auxTestReadWriteAsyncSingleClient(BookieServer bs) throws IOException {
SyncObj sync = new SyncObj();
try {
// Create a ledger
lh = bkc.createLedger(3, 2, digestType, ledgerPassword);
ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testWithoutZookeeper() throws Exception {
LedgerManagerFactory newLedgerManagerFactory = LedgerManagerFactory
.newLedgerManagerFactory(baseConf, zkc);
LedgerManager ledgerManager = newLedgerManagerFactory
... | #fixed code
@Test
public void testWithoutZookeeper() throws Exception {
for (int i = 0; i < numberOfLedgers; i++) {
createAndAddEntriesToLedger().close();
}
BookieLedgerIndexer bookieLedgerIndex = new BookieLedgerIndexer(
ledgerMan... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testReadWriteAsyncSingleClient() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
ledgerId = lh.getId();
... | #fixed code
@Test
public void testReadWriteAsyncSingleClient() throws IOException {
SyncObj sync = new SyncObj();
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
// bkc.initMessageDigest("SHA1");
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void initiate() {
/**
* Enable fencing on this op. When the read request reaches the bookies
* server it will fence off the ledger, stopping any subsequent operation
* from writing to it.
*/
int flags = BookieP... | #fixed code
public void initiate() {
ReadLastConfirmedOp rlcop = new ReadLastConfirmedOp(lh,
new ReadLastConfirmedOp.LastConfirmedDataCallback() {
public void readLastConfirmedDataComplete(int rc, RecoveryData data) {
if (rc == ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testReadWriteAsyncSingleClientThrottle() throws
IOException, NoSuchFieldException, IllegalAccessException {
try {
Integer throttle = 100;
ThrottleTestCallback tcb = new ThrottleTestCallback(throttle);
... | #fixed code
@Test
public void testReadWriteAsyncSingleClientThrottle() throws
IOException, NoSuchFieldException, IllegalAccessException {
SyncObj sync = new SyncObj();
try {
Integer throttle = 100;
ThrottleTestCallback tcb = new Thrott... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testMultiLedger() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
lh2 = bkc.createLedger(digestType, ledgerPassword);
long ledgerId = lh.getId... | #fixed code
@Test
public void testMultiLedger() throws IOException {
try {
// Create a ledger
lh = bkc.createLedger(digestType, ledgerPassword);
lh2 = bkc.createLedger(digestType, ledgerPassword);
long ledgerId = lh.getId();
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Around("within(@org.springframework.stereotype.Repository *)")
public Object invoke(ProceedingJoinPoint joinPoint) throws Throwable {
if (this.isEnabled) {
StopWatch sw = new StopWatch(joinPoint.toShortString());
sw.start("invoke");... | #fixed code
@Around("within(@org.springframework.stereotype.Repository *)")
public Object invoke(ProceedingJoinPoint joinPoint) throws Throwable {
if (this.enabled) {
StopWatch sw = new StopWatch(joinPoint.toShortString());
sw.start("invoke");
... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public Object eval(final String js) {
try {
Object _xblockexpression = null;
{
this.assertScriptEngine();
if (((this.maxCPUTimeInMs).longValue() == 0)) {
return this.scriptEngine.eval(js);
}
Object _xsy... | #fixed code
@Override
public Object eval(final String js) {
try {
Object _xblockexpression = null;
{
this.assertScriptEngine();
if (((this.maxCPUTimeInMs).longValue() == 0)) {
if (this.debug) {
InputOutput.<String>println("--- Running... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected void callOnError(final ExecutionError error) {
if (onError != null) {
onError.call(error);
}
synchronized (error.getContext()) {
callOnTerminate((C) error.getContext());
error.getContext().notifyAll(... | #fixed code
protected void callOnError(final ExecutionError error) {
if (onError != null) {
onError.call(error);
}
callOnTerminate((C) error.getContext());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected void callOnFinalState(final State<C> state, final C context) {
try {
if (onFinalStateHandler != null) {
if (isTrace())
log.debug("when final state {} for {} <<<", state, context);
onFinal... | #fixed code
protected void callOnFinalState(final State<C> state, final C context) {
try {
if (onFinalStateHandler != null) {
if (isTrace())
log.debug("when final state {} for {} <<<", state, context);
onFinalStateH... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected void callOnFinalState(final State<C> state, final C context) {
try {
if (onFinalStateHandler != null) {
if (isTrace())
log.debug("when final state {} for {} <<<", state, context);
onFinal... | #fixed code
protected void callOnFinalState(final State<C> state, final C context) {
try {
if (onFinalStateHandler != null) {
if (isTrace())
log.debug("when final state {} for {} <<<", state, context);
onFinalStateH... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void tableWrite() {
String fileName = TestFileUtil.getPath() + "tableWrite" + System.currentTimeMillis() + ".xlsx";
// 这里直接写多个table的案例了，如果只有一个 也可以直一行代码搞定，参照其他案例
// 这里 需要指定写用哪个class去写
ExcelWriter excelWriter = null;
... | #fixed code
@Test
public void tableWrite() {
String fileName = TestFileUtil.getPath() + "tableWrite" + System.currentTimeMillis() + ".xlsx";
// 这里直接写多个table的案例了，如果只有一个 也可以直一行代码搞定，参照其他案例
// 这里 需要指定写用哪个class去写
ExcelWriter excelWriter = null;
try ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@GET
@Path("/result_counter/{identifier}")
@Produces("application/json")
public EnumMap<ResultType, Integer> getCounterResults(@PathParam("identifier") String executionIdentifier) {
try {
return AlgorithmExecutionCache.getResultCounter(executionIdentifier)... | #fixed code
@GET
@Path("/result_counter/{identifier}")
@Produces("application/json")
public EnumMap<ResultType, Integer> getCounterResults(@PathParam("identifier") String executionIdentifier) {
try {
return this.resultCounts.get(executionIdentifier);
} catch (Exception ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected AlgorithmExecutor buildExecutor(String algorithmName) throws FileNotFoundException, UnsupportedEncodingException {
FunctionalDependencyResultReceiver fdResultReceiver =
new FunctionalDependencyPrinter(getResultFileName(algorithmName), getResultDirectoryNam... | #fixed code
protected AlgorithmExecutor buildExecutor(String algorithmName) throws FileNotFoundException, UnsupportedEncodingException {
LinkedList<ResultPrinter> resultPrinters = new LinkedList<ResultPrinter>();
FunctionalDependencyPrinter fdResultReceiver =
new FunctionalDepen... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void executeUniqueColumnCombinationsAlgorithmTest() {
// Setup
AlgorithmExecuter executer = new AlgorithmExecuter();
ByteArrayOutputStream outStream = new ByteArrayOutputStream();
List<ConfigurationValue> configs = new ArrayList<ConfigurationValue>();... | #fixed code
@Test
public void executeUniqueColumnCombinationsAlgorithmTest() {
// Setup
List<ConfigurationValue> configs = new ArrayList<ConfigurationValue>();
configs.add(new ConfigurationValueString("pathToInputFile", "blub"));
UniqueColumnCombinationResultReceiver resultReceiver... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testGenerateNewCsvFile() throws IOException {
// Setup
SimpleRelationalInput csv = generator.generateNewCsvFile();
// Check result
// The csv should contain both lines and iterate through them with next.
assertEquals(csvFileFixture.expectedF... | #fixed code
@Test
public void testGenerateNewCsvFile() throws SimpleRelationalInputGenerationException, IOException {
// Setup
SimpleRelationalInput csv = generator.generateNewCopy();
// Check result
// The csv should contain both lines and iterate through them with next.
asse... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void receiveResult(ColumnCombination columnCombination) {
try {
FileWriter writer = new FileWriter(this.file, true);
writer.write(columnCombination.toString() + "\n");
writer.close();
} catch (IOException e) {
// TODO Auto-generated catch ... | #fixed code
@Override
public void receiveResult(ColumnCombination columnCombination) {
appendToResultFile(columnCombination.toString());
} | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected AlgorithmExecutor buildExecutor(String algorithmName) throws FileNotFoundException, UnsupportedEncodingException {
FunctionalDependencyResultReceiver fdResultReceiver =
new FunctionalDependencyPrinter(getResultFileName(algorithmName), getResultDirectoryNam... | #fixed code
protected AlgorithmExecutor buildExecutor(String algorithmName) throws FileNotFoundException, UnsupportedEncodingException {
LinkedList<ResultPrinter> resultPrinters = new LinkedList<ResultPrinter>();
FunctionalDependencyPrinter fdResultReceiver =
new FunctionalDepen... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testGenerateNewCsvFile() throws IOException {
// Setup
SimpleRelationalInput csv = generator.generateNewCsvFile();
// Check result
// The csv should contain both lines and iterate through them with next.
assertEquals(csvFileFixture.expectedF... | #fixed code
@Test
public void testGenerateNewCsvFile() throws SimpleRelationalInputGenerationException, IOException {
// Setup
SimpleRelationalInput csv = generator.generateNewCopy();
// Check result
// The csv should contain both lines and iterate through them with next.
asse... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public T loadAlgorithm(String path) throws IOException, ClassNotFoundException, InstantiationException, IllegalAccessException, IllegalArgumentException, SecurityException, InvocationTargetException, NoSuchMethodException {
String pathToFolder = ClassLoader.getSystemReso... | #fixed code
public T loadAlgorithm(String path) throws IOException, ClassNotFoundException, InstantiationException, IllegalAccessException, IllegalArgumentException, SecurityException, InvocationTargetException, NoSuchMethodException {
String pathToFolder = ClassLoader.getSystemResource("... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testAddAlgorithm() throws EntityStorageException {
// Setup
HibernateUtil.clear();
AlgorithmServiceImpl finderService = new AlgorithmServiceImpl();
// Execute functionality: add an IND algorithm
Algorithm algorithm = new Algorithm... | #fixed code
@Test
public void testAddAlgorithm() throws EntityStorageException, AlgorithmLoadingException {
// Setup
HibernateUtil.clear();
AlgorithmServiceImpl finderService = new AlgorithmServiceImpl();
// Execute functionality: add an IND algorithm
Algorithm algo... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Override
public void executeAlgorithm(String algorithmName, List<InputParameter> parameters) throws AlgorithmConfigurationException, AlgorithmLoadingException, AlgorithmExecutionException {
List<ConfigurationValue> configs = convertInputParameters(parameters);
tr... | #fixed code
@Override
public void executeAlgorithm(String algorithmName, List<InputParameter> parameters) throws AlgorithmConfigurationException, AlgorithmLoadingException, AlgorithmExecutionException {
List<ConfigurationValue> configs = convertInputParameters(parameters);
Algorithm... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public ConfigurationSettingCsvFile getValues() {
if (this.listbox.getSelectedValue().equals("--")) {
this.messageReceiver.addError("You must choose a CSV file!");
return null;
}
FileInput currentFileInput = this.fileInputs.get(
this.listbo... | #fixed code
public ConfigurationSettingCsvFile getValues() throws InputValidationException {
String selectedValue = this.listbox.getSelectedValue();
if (selectedValue.equals("--")) {
throw new InputValidationException("You must choose a CSV file!");
}
FileInput curr... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testGenerateNewCsvFile() throws SimpleRelationalInputGenerationException, IOException {
// Setup
SimpleRelationalInput csv = generator.generateNewCopy();
// Check result
// The csv should contain both lines and iterate through them with next.
... | #fixed code
@Test
public void testGenerateNewCsvFile() throws SimpleRelationalInputGenerationException, InputIterationException {
// Setup
SimpleRelationalInput csv = generator.generateNewCopy();
// Check result
// The csv should contain both lines and iterate through them with ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public void testUpdateOnSuccess() {
// Set up
TestHelper.resetDatabaseSync();
Execution execution = new Execution(null, 12);
execution.setEnd(2345);
BasePage parent = new BasePage();
ResultsPage page = new ResultsPage(parent);
page.setMessage... | #fixed code
public void testUpdateOnSuccess() {
// Set up
TestHelper.resetDatabaseSync();
Algorithm algorithm = new Algorithm("example_ind_algorithm.jar");
Execution execution = new Execution(algorithm, 12);
execution.setEnd(2345);
BasePage parent = new BasePage()... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public List<Result> fetchNewResults(String algorithmName){
List<Result> newResults = new LinkedList<Result>();
for (ResultPrinter printer : currentResultPrinters.get(algorithmName)) {
// newResults.addAll(printer.getNewResults());
}
newResults.add(new UniqueCo... | #fixed code
public List<Result> fetchNewResults(String algorithmName){
List<Result> newResults = new LinkedList<Result>();
//newResults.add(currentResultReceivers.get(algorithmName).getNewResults());
newResults.add(new UniqueColumnCombination(new ColumnIdentifier("table", "col1")))... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testAddAlgorithm() throws EntityStorageException {
// Setup
HibernateUtil.clear();
AlgorithmServiceImpl finderService = new AlgorithmServiceImpl();
// Execute functionality: add an IND algorithm
Algorithm algorithm = new Algorithm... | #fixed code
@Test
public void testAddAlgorithm() throws EntityStorageException, AlgorithmLoadingException {
// Setup
HibernateUtil.clear();
AlgorithmServiceImpl finderService = new AlgorithmServiceImpl();
// Execute functionality: add an IND algorithm
Algorithm algo... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
public List<Class<?>> getAlgorithmInterfaces(File file) throws IOException, ClassNotFoundException {
JarFile jar = new JarFile(file);
Manifest man = jar.getManifest();
Attributes attr = man.getMainAttributes();
String className = attr.getValue(bootst... | #fixed code
public List<Class<?>> getAlgorithmInterfaces(File file) throws IOException, ClassNotFoundException {
JarFile jar = new JarFile(file);
Manifest man = jar.getManifest();
Attributes attr = man.getMainAttributes();
String className = attr.getValue(bootstrapCla... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testGenerateNewCsvFile() throws SimpleRelationalInputGenerationException, IOException {
// Setup
SimpleRelationalInput csv = generator.generateNewCopy();
// Check result
// The csv should contain both lines and iterate through them with next.
... | #fixed code
@Test
public void testGenerateNewCsvFile() throws SimpleRelationalInputGenerationException, InputIterationException {
// Setup
SimpleRelationalInput csv = generator.generateNewCopy();
// Check result
// The csv should contain both lines and iterate through them with ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
protected AlgorithmExecutor buildExecutor(String executionIdentifier)
throws FileNotFoundException, UnsupportedEncodingException {
ResultPrinter resultPrinter = new ResultPrinter(executionIdentifier, "results");
ResultsCache resultsCache = new ResultsCache()... | #fixed code
protected AlgorithmExecutor buildExecutor(String executionIdentifier)
throws FileNotFoundException, UnsupportedEncodingException {
ResultPrinter resultPrinter = new ResultPrinter(executionIdentifier);
ResultsCache resultsCache = new ResultsCache();
ResultsHub ... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testStoreTableInput() throws EntityStorageException, InputValidationException {
// Setup
TestHelper.resetDatabaseSync();
BasePage parent = new BasePage();
InputConfigurationPage page = new InputConfigurationPage(parent);
page.setEr... | #fixed code
@Test
public void testStoreTableInput() throws EntityStorageException, InputValidationException {
// Setup
TestHelper.resetDatabaseSync();
final boolean[] blocked = {true};
BasePage parent = new BasePage();
InputConfigurationPage page = new InputConfigura... | Below is the vulnerable code, please generate the patch based on the following information. |
#vulnerable code
@Test
public void testNextSeparator() throws IOException {
// Setup
CsvFileOneLineFixture fixtureSeparator = new CsvFileOneLineFixture(';');
CsvFile csvFileSeparator = fixtureSeparator.getTestData();
// Check result
assertEquals(fixtureSeparator.getExpectedS... | #fixed code
@Test
public void testNextSeparator() throws InputIterationException {
// Setup
CsvFileOneLineFixture fixtureSeparator = new CsvFileOneLineFixture(';');
CsvFile csvFileSeparator = fixtureSeparator.getTestData();
// Check result
assertEquals(fixtureSeparator.getExp... | Below is the vulnerable code, please generate the patch based on the following information. |
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