repo_id string | cross_repo_split string | commit_index int32 | commit_sha string | in_repo_split string | test_file string | file_split string | split_group string | lineno int32 | col_offset int32 | assertion_type string | test_function string | prefix large_string | target string | assertion_event_type string | assertion_event_id string | assertion_anchor large_string | old_target string | old_lineno int32 | old_col_offset int32 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | train | 297 | e8c025b8b5dcf7ca3f10f5fc85e219d983f0f99e | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 431 | 4 | assert | test_evaluate_func_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | isinstance(evaluate("gradient(a)", col), VectorField) | modified | 1374029975337b7aafebae55bdcafe60f3b54726e9374e7e9df85a0f9d7b1201 | assert|test_evaluate_func_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, Ten... | isinstance(evaluate("gradient(a)", col), VectorField) | 431 | 4 |
zwicker-group/py-pde | train | 297 | e8c025b8b5dcf7ca3f10f5fc85e219d983f0f99e | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 432 | 4 | assert | test_evaluate_func_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | isinstance(evaluate("a * v", col), VectorField) | modified | 628977c50ebe3076c08f9706c881f0bcc2e2c90a898c85bdd1a10354f72968a9 | assert|test_evaluate_func_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, Ten... | isinstance(evaluate("a * v", col), VectorField) | 432 | 4 |
zwicker-group/py-pde | train | 298 | 09feb4b9707e3f6b58ae6d7c97bf53198f6b36d6 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 390 | 8 | assert_* | test_expression_bc_setting_mixed | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | f2._data_full) | added | 9e0154453e29ff3681cae55737a48561da8c3ed2b4e118e7f59563659e1936ba | assert_*|test_expression_bc_setting_mixed|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, ... | null | null | null |
zwicker-group/py-pde | train | 298 | 09feb4b9707e3f6b58ae6d7c97bf53198f6b36d6 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 481 | 9 | pytest.raises | test_expression_invalid_args | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | BCDataError) | added | 3a353cbf00d778a486c301608a5114378931782129573d8ae24b004c461595b1 | pytest.raises|test_expression_invalid_args|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes,... | null | null | null |
zwicker-group/py-pde | train | 298 | 09feb4b9707e3f6b58ae6d7c97bf53198f6b36d6 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 499 | 4 | assert | test_expression_bc_polar_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | state._data_full[-1] | added | 599c1699b92b1f679048c5b0e16a4b1af476031cd7856568426f98e4b34a2476 | assert|test_expression_bc_polar_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, regis... | null | null | null |
zwicker-group/py-pde | train | 298 | 09feb4b9707e3f6b58ae6d7c97bf53198f6b36d6 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 505 | 4 | assert | test_getting_registered_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
_get_arr_1d,
registered_boundary_condition_classes,
registered_boundary_... | isinstance(registered_boundary_condition_names(), dict) | added | 0d788e9ef06ff55dbc1de32f6d1f9fbba76960a411b64ecc4de6797dbcbeec3a | assert|test_getting_registered_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, _get_arr_1d, registered_boundary_condition_classes, registe... | null | null | null |
zwicker-group/py-pde | train | 299 | 9c628e4fdd63f3992049160b42bbf6893e39ff9c | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 206 | 4 | assert_* | test_random_harmonic | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | y.data) | added | d90605cb575b6dd2482b31ee039de2b8d7257d88f33654e5c8cfa161578d91c4 | assert_*|test_random_harmonic|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, PolarSy... | null | null | null |
zwicker-group/py-pde | train | 299 | 9c628e4fdd63f3992049160b42bbf6893e39ff9c | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 357 | 4 | assert_* | test_boundary_interpolation_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | bndry_val) | modified | b4887153b0dfb369d5c788902b5a15d211f4b1bc55094770b932f550423135ab | assert_*|test_boundary_interpolation_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGri... | bndry_val) | 359 | 8 |
zwicker-group/py-pde | train | 299 | 9c628e4fdd63f3992049160b42bbf6893e39ff9c | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 531 | 4 | assert_* | test_piecewise_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | field_data) | added | 71585b68176d83ac6485572cf632579e7839b4116ef39baee7c71840e7bb9000 | assert_*|test_piecewise_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, P... | null | null | null |
zwicker-group/py-pde | train | 299 | 9c628e4fdd63f3992049160b42bbf6893e39ff9c | train | tests/fields/test_tensorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_tensorial_fields.py | 176 | 8 | assert_* | test_tensor_invariants | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculation... | f_rot.to_scalar(f"invariant{i}").data) | added | 6fad25e22662a581f691d63320748ba6bc6c3293166c86a0dd5ddb3af34e5b8f | assert_*|test_tensor_invariants|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """test... | null | null | null |
zwicker-group/py-pde | train | 299 | 9c628e4fdd63f3992049160b42bbf6893e39ff9c | train | tests/fields/test_tensorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_tensorial_fields.py | 226 | 9 | pytest.raises | test_from_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic():
"""test some tensor calculation... | ValueError) | modified | d5fdf872a26cd3c3557c10c3fb3ce7910cc728e34e5f1bc3a50e7824f43866a9 | pytest.raises|test_from_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid from pde.fields.base import FieldBase def test_tensors_basic(): """... | ValueError) | 228 | 9 |
zwicker-group/py-pde | train | 299 | 9c628e4fdd63f3992049160b42bbf6893e39ff9c | train | tests/tools/test_cuboid.py | train | zwicker-group/py-pde:tests/tools/test_cuboid.py | 112 | 4 | assert | test_asanyarray_flags | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.cuboid import Cuboid, asanyarray_flags
def test_cuboid_2d():
"""test Cuboid class in 2d"""
c = Cuboid([-1, -1], [2, 2])
assert c.dim == 2
assert c.volume == 4
assert c.diagonal == pyte... | asanyarray_flags(a, int) | modified | 8e291bdb2ec5b46be4fdd04f5ac0c92c3249ae14b9d7543fc80df0d8605f3192 | assert|test_asanyarray_flags|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.cuboid import Cuboid, asanyarray_flags def test_cuboid_2d(): """test Cuboid class in 2d""" c = Cuboid([-1, -1], [2, 2]) assert c.dim == 2 assert c.volume == 4 assert c.diagonal ==... | asanyarray_flags(a, np.intc) | 112 | 4 |
zwicker-group/py-pde | train | 299 | 9c628e4fdd63f3992049160b42bbf6893e39ff9c | train | tests/tools/test_cuboid.py | train | zwicker-group/py-pde:tests/tools/test_cuboid.py | 113 | 4 | assert | test_asanyarray_flags | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.cuboid import Cuboid, asanyarray_flags
def test_cuboid_2d():
"""test Cuboid class in 2d"""
c = Cuboid([-1, -1], [2, 2])
assert c.dim == 2
assert c.volume == 4
assert c.diagonal == pyte... | asanyarray_flags(a, writeable=False) | modified | 6cfbe8b91ea2c5926438c01097b447ba5cc384ab11c5f883463e72d8536b4623 | assert|test_asanyarray_flags|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.cuboid import Cuboid, asanyarray_flags def test_cuboid_2d(): """test Cuboid class in 2d""" c = Cuboid([-1, -1], [2, 2]) assert c.dim == 2 assert c.volume == 4 assert c.diagonal ==... | asanyarray_flags(a, writeable=False) | 113 | 4 |
zwicker-group/py-pde | train | 299 | 9c628e4fdd63f3992049160b42bbf6893e39ff9c | train | tests/tools/test_cuboid.py | train | zwicker-group/py-pde:tests/tools/test_cuboid.py | 121 | 8 | assert | test_asanyarray_flags | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.tools.cuboid import Cuboid, asanyarray_flags
def test_cuboid_2d():
"""test Cuboid class in 2d"""
c = Cuboid([-1, -1], [2, 2])
assert c.dim == 2
assert c.volume == 4
assert c.diagonal == pyte... | writeable | modified | cf5ad333bd68a23537b10c5b35aa4d8a39ac4fb9414727e2c3ca444ae43a0a32 | assert|test_asanyarray_flags|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.tools.cuboid import Cuboid, asanyarray_flags def test_cuboid_2d(): """test Cuboid class in 2d""" c = Cuboid([-1, -1], [2, 2]) assert c.dim == 2 assert c.volume == 4 assert c.diagonal ==... | writeable | 121 | 8 |
zwicker-group/py-pde | train | 300 | f71e6c3a1481a53b1e3beb960b39be55c1d10a2b | train | tests/grids/test_spherical_grids.py | train | zwicker-group/py-pde:tests/grids/test_spherical_grids.py | 158 | 4 | assert | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid
from pde.grids.boundaries.local import NeumannBC
def test_polar_grid(rng):
"""test simple polar grid"""
grid = PolarSymGrid(4, 8)
as... | b_inner | modified | fb8db86457c99da267a7c357843b1cee63912a71d9ccfc4103b9549aea43af29 | assert|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, SphericalSymGrid from pde.grids.boundaries.local import NeumannBC def test_polar_grid(rng): """test simple polar grid""" grid... | b_inner | 158 | 4 |
zwicker-group/py-pde | train | 300 | f71e6c3a1481a53b1e3beb960b39be55c1d10a2b | train | tests/pdes/test_diffusion_pdes.py | train | zwicker-group/py-pde:tests/pdes/test_diffusion_pdes.py | 35 | 4 | assert | test_simple_diffusion_value | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import stats
from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
def test_diffusion_single(rng):
"""test some methods of the simple diffusion model"""
eq = DiffusionPDE()... | isinstance(info, dict) | modified | d6c99be958fe6ee1e879e0632609815fffb5224f14ac7ebeeb21cac7c231387f | assert|test_simple_diffusion_value|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import stats from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid def test_diffusion_single(rng): """test some methods of the simple diffusion model... | isinstance(info, dict) | 35 | 4 |
zwicker-group/py-pde | train | 300 | f71e6c3a1481a53b1e3beb960b39be55c1d10a2b | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 229 | 4 | assert_* | test_pde_spatial_args | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
from... | np.array([0.0, 0.0, 0.0, 0.0])) | modified | 61b89e952742b932b528c8c46ea994c5a619a358e06735145273d70021bcbf5c | assert_*|test_pde_spatial_args|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.l... | np.array([0.0, 0.0, 0.0, 0.0])) | 229 | 4 |
zwicker-group/py-pde | train | 300 | f71e6c3a1481a53b1e3beb960b39be55c1d10a2b | train | tests/pdes/test_wave_pdes.py | train | zwicker-group/py-pde:tests/pdes/test_wave_pdes.py | 15 | 4 | assert | test_wave_consistency | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, ScalarField, UnitGrid, WavePDE
@pytest.mark.parametrize("dim", [1, 2])
def test_wave_consistency(dim, rng):
"""test some methods of the wave model"""
eq = WavePDE()
assert | isinstance(str(eq), str) | modified | ce18468daf3a8647fad636dee739fd2d8b06cd00226232347c27161dec6f068e | assert|test_wave_consistency|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, ScalarField, UnitGrid, WavePDE @pytest.mark.parametrize("dim", [1, 2]) def test_wave_consistency(dim, rng): """test some methods of the wave model""" eq = WavePDE() assert | isinstance(str(eq), str) | 15 | 4 |
zwicker-group/py-pde | train | 300 | f71e6c3a1481a53b1e3beb960b39be55c1d10a2b | train | tests/test_integration.py | train | zwicker-group/py-pde:tests/test_integration.py | 34 | 4 | assert_* | test_inhomogeneous_bcs_1 | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid
from pde.tools import misc, mpi, numba
@misc.skipUnlessModule("h5py")
def te... | 0.9 * np.sin(data["data_x"])) | modified | 274a954eb2e656dd03a87d04899079cedf06eff37d211da5a00cc25477e8a950 | assert_*|test_inhomogeneous_bcs_1|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid from pde.tools import misc, mpi, numba @misc.sk... | 0.9 * np.sin(data["data_x"])) | 34 | 4 |
zwicker-group/py-pde | train | 300 | f71e6c3a1481a53b1e3beb960b39be55c1d10a2b | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 168 | 4 | assert_* | test_derivatives | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | [9, 12]) | modified | 5cbed8beac44899f804aba5efbd847f3ef4a17227f884d54539047881b59ce61 | assert_*|test_derivatives|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExpressi... | [9, 12]) | 168 | 4 |
zwicker-group/py-pde | train | 300 | f71e6c3a1481a53b1e3beb960b39be55c1d10a2b | train | tests/tools/test_spectral.py | train | zwicker-group/py-pde:tests/tools/test_spectral.py | 84 | 4 | assert_* | test_noise_scaling | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from scipy import fftpack, stats
from pde import CartesianGrid, UnitGrid
from pde.tools.spectral import make_colored_noise
def spectral_density(data, dx=1.0):
"""calculate the power spectral density of a field
... | *result) | modified | 74c27fcc310c5539621ca05ec9b83a00d73d1836908a4d90139d5d99b7ce9588 | assert_*|test_noise_scaling|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from scipy import fftpack, stats from pde import CartesianGrid, UnitGrid from pde.tools.spectral import make_colored_noise def spectral_density(data, dx=1.0): """calculate the power spectral dens... | *result) | 84 | 4 |
zwicker-group/py-pde | train | 300 | f71e6c3a1481a53b1e3beb960b39be55c1d10a2b | train | tests/visualization/test_movies.py | train | zwicker-group/py-pde:tests/visualization/test_movies.py | 61 | 9 | pytest.raises | test_movie_wrong_path | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.fields import ScalarField
from pde.grids import UnitGrid
from pde.pdes import DiffusionPDE
from pde.storage import MemoryStorage
from pde.visualization import movies
@pytest.mark.skipif(not movies.Movie.is_available(), reason="no... | OSError) | modified | 6d2dd0cef1294668dd1dc2354d77e270f4ea78ab493eac4bfd236f80cb3bcab4 | pytest.raises|test_movie_wrong_path|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.fields import ScalarField from pde.grids import UnitGrid from pde.pdes import DiffusionPDE from pde.storage import MemoryStorage from pde.visualization import movies @pytest.mark.skipif(not movies.... | OSError) | 62 | 9 |
zwicker-group/py-pde | train | 301 | 4f2632b377882e296fbb5dbdab2cd6b246a727a8 | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 397 | 4 | assert_* | test_poisson_solver_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | d.data) | added | 7fab6930d4c24e6e82066f49063793f57354c88cd0a72d7284fdbee183395c82 | assert_*|test_poisson_solver_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import car... | null | null | null |
zwicker-group/py-pde | train | 302 | cafb881b2c97fd714c689d6b517a026f29f10cf5 | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 116 | 4 | assert_* | test_collections_copy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | np.ones(12)) | modified | b937e02abbc516cdd70503fe416f4dac24fb1dd8e3b29c721be21d784fbd4db1 | assert_*|test_collections_copy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUn... | np.ones(12)) | 115 | 4 |
zwicker-group/py-pde | train | 302 | cafb881b2c97fd714c689d6b517a026f29f10cf5 | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 191 | 8 | assert_* | test_smoothing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | fields[i].smooth(sgm).data) | modified | cc167ed7e1415b25dd2e448db44df7410e8f4fc4a0cd20bafea116607a4be5f9 | assert_*|test_smoothing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import sk... | fields[i].smooth(sgm).data) | 190 | 8 |
zwicker-group/py-pde | train | 302 | cafb881b2c97fd714c689d6b517a026f29f10cf5 | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 335 | 4 | assert_* | test_from_data | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | f2.data) | modified | eeb5fda029df8a2febfe7aa8972bf9eb35f2e6c1952f88d7c86c3b40bad6ede0 | assert_*|test_from_data|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUnlessMod... | f2.data) | 334 | 4 |
zwicker-group/py-pde | train | 302 | cafb881b2c97fd714c689d6b517a026f29f10cf5 | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 345 | 4 | assert_* | test_collection_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import skipUnlessModule
@pytest.mark.par... | v.data * 2) | modified | 825895ed53356335111facfff97e03633f804101b1a83c795f0e90d35725d21c | assert_*|test_collection_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import skipUn... | v.data * 2) | 344 | 4 |
zwicker-group/py-pde | train | 303 | 0f7371f470418694bc90e6b09c0c17453481490f | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 195 | 46 | pytest.approx | test_mixed_condition | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | bc2.get_virtual_point(data)) | modified | 6ef2f0a472ba575b95ede5eb31f6cc41b87d66f4138562a89c54a7059a678e77 | pytest.approx|test_mixed_condition|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary_conditi... | bc2.get_virtual_point(data)) | 194 | 46 |
zwicker-group/py-pde | train | 303 | 0f7371f470418694bc90e6b09c0c17453481490f | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 272 | 4 | assert | test_inhomogeneous_bcs_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | pytest.approx(2.5) | modified | 8e5ebf41fe40b0fcec713fc44315fd5805441d2be3963799c4590da10e27e601 | assert|test_inhomogeneous_bcs_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary_condition... | pytest.approx(2.5) | 271 | 4 |
zwicker-group/py-pde | train | 303 | 0f7371f470418694bc90e6b09c0c17453481490f | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 421 | 4 | assert | test_expression_bc_value | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | bc2.get_mathematical_representation("field") | modified | 77b954b2374bafed205fcf8164445fadd9423318f19110a16ee462b4964ac636 | assert|test_expression_bc_value|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary_condition_... | bc2.get_mathematical_representation("field") | 420 | 4 |
zwicker-group/py-pde | train | 303 | 0f7371f470418694bc90e6b09c0c17453481490f | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 581 | 4 | assert_* | test_user_bcs_numpy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | f2._data_full) | added | 5f6e36fe749e9e57b50b58b0e403bd2f0ad2087614b853410fdfba15b5de3fad | assert_*|test_user_bcs_numpy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary_condition_cla... | null | null | null |
zwicker-group/py-pde | train | 304 | 0784f3e22e888e0343a48b7e8fefb696bf5f69ce | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 564 | 8 | assert | test_expression_bc_user_func | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | pytest.approx(np.sin(2)) | added | d3ad3049d84aac33d06054a0f81e97a9698bdd7808c6b6bd63126df163cecdd5 | assert|test_expression_bc_user_func|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary_condit... | null | null | null |
zwicker-group/py-pde | train | 304 | 0784f3e22e888e0343a48b7e8fefb696bf5f69ce | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 569 | 4 | assert | test_getting_registered_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | isinstance(registered_boundary_condition_classes(), dict) | added | eccd3d6276c3b309f28a01b54d9f07c311dfc1b8b29c45a1312b6a56a10ef85e | assert|test_getting_registered_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary_conditi... | null | null | null |
zwicker-group/py-pde | train | 304 | 0784f3e22e888e0343a48b7e8fefb696bf5f69ce | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 599 | 4 | assert_* | test_user_bcs_numpy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | f2._data_full) | added | d8a2b6f698ae73e25802898c25ec0485258b42230027cc7562477f67e4609b67 | assert_*|test_user_bcs_numpy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary_condition_cla... | null | null | null |
zwicker-group/py-pde | train | 304 | 0784f3e22e888e0343a48b7e8fefb696bf5f69ce | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 633 | 4 | assert_* | test_user_bcs_numba | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | f2._data_full) | added | a50b61dfa6a1ecf84bd280792d5bdec9c2d763e197a104d2d65afecc91d759c8 | assert_*|test_user_bcs_numba|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary_condition_cla... | null | null | null |
zwicker-group/py-pde | train | 305 | 6bee43ae9e689df99285d8f2fb87baf46f7d41ed | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 357 | 4 | assert_* | test_poisson_solver_cartesian | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | d.data) | added | dc2a6720209df30b9e72d2cf5c984868466bdecc9da8c0a152537a35a094de9e | assert_*|test_poisson_solver_cartesian|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import car... | null | null | null |
zwicker-group/py-pde | train | 305 | 6bee43ae9e689df99285d8f2fb87baf46f7d41ed | train | tests/grids/operators/test_common_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_common_operators.py | 30 | 8 | assert_* | test_make_derivative | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField
from pde.grids.operators import cartesian as ops
@pytest.mark.parametrize("ndim,axis", [(1, 0), (2, 0), (2, 1), (3, 0), (3, 1), (3, 2)])
def test_make_derivative... | res.data) | added | d290341123b98d6ab55ecdd001a59ca355d3ecbc50970566e948106b841753cd | assert_*|test_make_derivative|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from pde import CartesianGrid, ScalarField from pde.grids.operators import cartesian as ops @pytest.mark.parametrize("ndim,axis", [(1, 0), (2, 0), (2, 1), (3, 0), (3, 1), (3, 2)])... | null | null | null |
zwicker-group/py-pde | train | 305 | 6bee43ae9e689df99285d8f2fb87baf46f7d41ed | train | tests/grids/operators/test_common_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_common_operators.py | 51 | 4 | assert_* | test_make_derivative2 | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField
from pde.grids.operators import cartesian as ops
@pytest.mark.parametrize("ndim,axis", [(1, 0), (2, 0), (2, 1), (3, 0), (3, 1), (3, 2)])
def test_make_derivative... | res.data) | added | fec2c3e9ffa52345f605fc72ab3e70b80ca477fbba1e9729beb5aa8b3053f832 | assert_*|test_make_derivative2|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from pde import CartesianGrid, ScalarField from pde.grids.operators import cartesian as ops @pytest.mark.parametrize("ndim,axis", [(1, 0), (2, 0), (2, 1), (3, 0), (3, 1), (3, 2)]... | null | null | null |
zwicker-group/py-pde | train | 306 | c2734ec80a150d4cf6116b207c51084312ba2e17 | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 72 | 8 | assert_* | test_unit_grid_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | np.arange(4) + 0.5) | modified | 09bae0b23984e37a7989dcccf6249e8d0f2cb266cb04f458da7e074a7219820f | assert_*|test_unit_grid_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import make_deriva... | np.arange(4) + 0.5) | 71 | 8 |
zwicker-group/py-pde | train | 306 | c2734ec80a150d4cf6116b207c51084312ba2e17 | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 233 | 8 | assert | test_rect_grid_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | np.all(grid.polar_coordinates_real(p) < np.sqrt(2)) | modified | 1220f9cada36dc37a01b6f834d5748a9405820078e3adf098ef15747cbf7c28f | assert|test_rect_grid_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import make_derivati... | np.all(grid.polar_coordinates_real(p) < np.sqrt(2)) | 232 | 8 |
zwicker-group/py-pde | train | 306 | c2734ec80a150d4cf6116b207c51084312ba2e17 | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 339 | 9 | pytest.raises | test_setting_boundary_conditions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | PeriodicityError) | modified | 8caa9d64cbfe5f04f89e53732fac773bb2616133b09475d452cb87094df22a17 | pytest.raises|test_setting_boundary_conditions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.commo... | PeriodicityError) | 338 | 9 |
zwicker-group/py-pde | train | 306 | c2734ec80a150d4cf6116b207c51084312ba2e17 | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 407 | 8 | assert_* | test_generic_operators | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | op3(data)[0]) | added | 64ac74545ff6434b26d3068b32b63018525cf1039dd36211c65aacb727c6cc4e | assert_*|test_generic_operators|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import make_d... | null | null | null |
zwicker-group/py-pde | train | 307 | e7fa14238691f61e03782def5fdea6d67a8762d8 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 341 | 8 | assert_* | test_expression_bc_setting_derivative | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condit... | f2._data_full) | modified | 1df7006f7d55a71b3bb3e5863f131309d237f1e03755c16f08415e681e43d824 | assert_*|test_expression_bc_setting_derivative|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, r... | f2._data_full) | 341 | 8 |
zwicker-group/py-pde | train | 307 | e7fa14238691f61e03782def5fdea6d67a8762d8 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 563 | 8 | assert | test_expression_bc_user_func | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condit... | pytest.approx(np.sin(1)) | modified | f0945e762345362d8eafbb56bdd4c1ec71452074eac37515a31011ad2e631e5c | assert|test_expression_bc_user_func|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_b... | pytest.approx(np.sin(1)) | 563 | 8 |
zwicker-group/py-pde | train | 307 | e7fa14238691f61e03782def5fdea6d67a8762d8 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 608 | 4 | assert | test_getting_registered_bcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condit... | isinstance(registered_boundary_condition_names(), dict) | added | 8257fcc5eb23702fa6b49dc16e88da85a47a4d4ea41647f93e9d3f25ef4849bb | assert|test_getting_registered_bcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_bo... | null | null | null |
zwicker-group/py-pde | train | 307 | e7fa14238691f61e03782def5fdea6d67a8762d8 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 671 | 4 | assert_* | test_user_bcs_numba | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid
from pde.grids.boundaries.local import (
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condit... | f2._data_full) | added | 7f9b68db8efaf6f0323cf9a9183be03e93cb6addf4f2e94018becc2da8688a4d | assert_*|test_user_bcs_numba|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid from pde.grids.boundaries.local import ( BCBase, BCDataError, ExpressionValueBC, _get_arr_1d, registered_boundary... | null | null | null |
zwicker-group/py-pde | train | 308 | 2d814f13729fd3eb989d663e4e66748f1a4e5b58 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 78 | 8 | assert | test_individual_boundaries | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid
from pde.grids._mesh import GridMesh
from pde.grids.boundaries.local import (
_MPIBC,
BCBase,
BCDataError,
ExpressionValueBC... | bc.get_mathematical_representation("field") | modified | 748cb6bc822ec6c92e353799f816db56f27c8d9f3ccd7cc73ab517695b2b1f7f | assert|test_individual_boundaries|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid from pde.grids._mesh import GridMesh from pde.grids.boundaries.local import ( _MPIBC, BCBase, BCDataError, E... | bc.get_mathematical_representation("field") | 76 | 8 |
zwicker-group/py-pde | train | 308 | 2d814f13729fd3eb989d663e4e66748f1a4e5b58 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 179 | 4 | assert | test_virtual_points_linked_data | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid
from pde.grids._mesh import GridMesh
from pde.grids.boundaries.local import (
_MPIBC,
BCBase,
BCDataError,
ExpressionValueBC... | not bc.value_is_linked | modified | 54e1d776f560c14039b7aa94a1544776cd157b54403be506a1589b5a47f848bc | assert|test_virtual_points_linked_data|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid from pde.grids._mesh import GridMesh from pde.grids.boundaries.local import ( _MPIBC, BCBase, BCDataErr... | not bc.value_is_linked | 177 | 4 |
zwicker-group/py-pde | train | 308 | 2d814f13729fd3eb989d663e4e66748f1a4e5b58 | train | tests/grids/boundaries/test_local_boundaries.py | val | zwicker-group/py-pde:tests/grids/boundaries/test_local_boundaries.py | 680 | 4 | assert_* | test_user_bcs_numpy | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid
from pde.grids._mesh import GridMesh
from pde.grids.boundaries.local import (
_MPIBC,
BCBase,
BCDataError,
ExpressionValueBC... | f2._data_full) | added | 85a240e599fd3b5f042c3ab580e019a71bddfa1e9672a0f05462b262e8eb852b | assert_*|test_user_bcs_numpy|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid from pde.grids._mesh import GridMesh from pde.grids.boundaries.local import ( _MPIBC, BCBase, BCDataError, Expres... | null | null | null |
zwicker-group/py-pde | train | 308 | 2d814f13729fd3eb989d663e4e66748f1a4e5b58 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 188 | 9 | pytest.raises | test_pde_noise | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
de... | ValueError) | added | 22f0dad9134787a408043a1884426fc3ed2ace662e780eee21ed85e5f9b8cbd2 | pytest.raises|test_pde_noise|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.loc... | null | null | null |
zwicker-group/py-pde | train | 308 | 2d814f13729fd3eb989d663e4e66748f1a4e5b58 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 209 | 9 | pytest.raises | test_pde_spatial_args | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
de... | RuntimeError) | added | 4d32b520186a1d8891083982fcfcf8727795467cbede1cba6e6457e128ffd3bb | pytest.raises|test_pde_spatial_args|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundar... | null | null | null |
zwicker-group/py-pde | train | 308 | 2d814f13729fd3eb989d663e4e66748f1a4e5b58 | train | tests/pdes/test_pde_class.py | train | zwicker-group/py-pde:tests/pdes/test_pde_class.py | 224 | 4 | assert_* | test_pde_user_funcs | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numpy as np
import pytest
from scipy import stats
from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids
from pde.fields import FieldCollection, ScalarField, VectorField
from pde.grids.boundaries.local import BCDataError
de... | field.gradient("auto_periodic_neumann").data[0]) | added | 5061fa80ef02756ace9e44ab68a0acd5cda2409a30c2d02ece8edd382e080367 | assert_*|test_pde_user_funcs|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numpy as np import pytest from scipy import stats from pde import PDE, MemoryStorage, SwiftHohenbergPDE, grids from pde.fields import FieldCollection, ScalarField, VectorField from pde.grids.boundaries.loc... | null | null | null |
zwicker-group/py-pde | train | 308 | 2d814f13729fd3eb989d663e4e66748f1a4e5b58 | train | tests/pdes/test_pdes_mpi.py | val | zwicker-group/py-pde:tests/pdes/test_pdes_mpi.py | 64 | 4 | assert | test_pde_complex_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, grids
from pde.fields import ScalarField, VectorField
from pde.tools import mpi
@pytest.mark.multiprocessing
@pytest.mark.parametrize("dim", [1, 2, 3])
@pytest.mark.parametrize("backen... | eq.complex_valued | added | f08dbcc681fb96d384482e6640f138ed1edf789e4cf42ce1d0ffc089cc27a4a2 | assert|test_pde_complex_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, grids from pde.fields import ScalarField, VectorField from pde.tools import mpi @pytest.mark.multiprocessing @pytest.mark.parametrize("dim", [1, 2, 3]) @pytest.... | null | null | null |
zwicker-group/py-pde | train | 308 | 2d814f13729fd3eb989d663e4e66748f1a4e5b58 | train | tests/pdes/test_pdes_mpi.py | val | zwicker-group/py-pde:tests/pdes/test_pdes_mpi.py | 110 | 8 | assert_* | test_pde_const_mpi | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, grids
from pde.fields import ScalarField, VectorField
from pde.tools import mpi
@pytest.mark.multiprocessing
@pytest.mark.parametrize("dim", [1, 2, 3])
@pytest.mark.parametrize("backen... | res_b.data) | added | b65171a27f0d1bf596ddc4253c8832a08781bf7997e018df5843328de292799f | assert_*|test_pde_const_mpi|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, grids from pde.fields import ScalarField, VectorField from pde.tools import mpi @pytest.mark.multiprocessing @pytest.mark.parametrize("dim", [1, 2, 3]) @pytest.... | null | null | null |
zwicker-group/py-pde | train | 309 | 58c2625d74b66b019bd37fc0ee069012b30f06ba | train | tests/storage/test_file_storages.py | val | zwicker-group/py-pde:tests/storage/test_file_storages.py | 123 | 17 | pytest.raises | test_storage_fixed_size | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
import pde
from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid
from pde.tools.misc import skipUnlessModule
@skipUnlessModule("h5py")
@pytest.mark.parametrize("collection", [True, False])
def test_storage_pe... | (TypeError, ValueError, RuntimeError)) | modified | 15609a900887b1116aaba3abb44a3a03c7bacdddb98adb2dcc1fabfa01bbbf77 | pytest.raises|test_storage_fixed_size|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest import pde from pde import DiffusionPDE, FileStorage, ScalarField, UnitGrid from pde.tools.misc import skipUnlessModule @skipUnlessModule("h5py") @pytest.mark.parametrize("collection", ... | (TypeError, ValueError, RuntimeError)) | 123 | 17 |
zwicker-group/py-pde | train | 309 | 58c2625d74b66b019bd37fc0ee069012b30f06ba | train | tests/storage/test_generic_storages.py | train | zwicker-group/py-pde:tests/storage/test_generic_storages.py | 154 | 4 | assert | test_storing_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | storage.has_collection | modified | 6c4189c90b9c892c44b35a6ed6c2ce1e20bea1117c8d56e8780b9a737f9ce958 | assert|test_storing_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tool... | storage.has_collection | 154 | 4 |
zwicker-group/py-pde | train | 309 | 58c2625d74b66b019bd37fc0ee069012b30f06ba | train | tests/storage/test_generic_storages.py | train | zwicker-group/py-pde:tests/storage/test_generic_storages.py | 186 | 4 | assert_* | test_storage_apply | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.tools import mpi
from pde.tools.... | s1.times) | modified | fa3c6d41c20282e00d0c0707e557a7eec9dbb6288d6385cc3d0bd87ed5165d24 | assert_*|test_storage_apply|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import functools import platform import numpy as np import pytest from pde import DiffusionPDE, FileStorage, MemoryStorage, UnitGrid from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.tools i... | s1.times) | 186 | 4 |
zwicker-group/py-pde | train | 309 | 58c2625d74b66b019bd37fc0ee069012b30f06ba | train | tests/trackers/test_interrupts.py | train | zwicker-group/py-pde:tests/trackers/test_interrupts.py | 50 | 4 | assert | test_interrupt_tstart | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.trackers.interrupts import (
ConstantInterrupts,
FixedInterrupts,
LogarithmicInterrupts,
RealtimeInterrupts,
parse_interrupt,
)
def test_interrupt_constant():
"""test the ConstantInterru... | pytest.approx(11) | modified | 9b375541d37ae77f4e0ca29d8d4bcf91a1e03edc1147199a0b3e77f66b23e36a | assert|test_interrupt_tstart|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.trackers.interrupts import ( ConstantInterrupts, FixedInterrupts, LogarithmicInterrupts, RealtimeInterrupts, parse_interrupt, ) def test_interrupt_constant(): """test the ConstantInterr... | pytest.approx(11) | 50 | 4 |
zwicker-group/py-pde | train | 309 | 58c2625d74b66b019bd37fc0ee069012b30f06ba | train | tests/trackers/test_interrupts.py | train | zwicker-group/py-pde:tests/trackers/test_interrupts.py | 62 | 4 | assert | test_interrupt_logarithmic | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde.trackers.interrupts import (
ConstantInterrupts,
FixedInterrupts,
LogarithmicInterrupts,
RealtimeInterrupts,
parse_interrupt,
)
def test_interrupt_constant():
"""test the ConstantInterru... | pytest.approx(8) | modified | a74348a5ba6bb3ba9afc7ad05d0b2c15a9b8e3ff7f4884eaaf420062e3752b3a | assert|test_interrupt_logarithmic|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde.trackers.interrupts import ( ConstantInterrupts, FixedInterrupts, LogarithmicInterrupts, RealtimeInterrupts, parse_interrupt, ) def test_interrupt_constant(): """test the ConstantI... | pytest.approx(8) | 62 | 4 |
zwicker-group/py-pde | train | 309 | 58c2625d74b66b019bd37fc0ee069012b30f06ba | train | tests/trackers/test_trackers.py | train | zwicker-group/py-pde:tests/trackers/test_trackers.py | 213 | 4 | assert | test_consistency_tracker | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | con.info["t_end"] | modified | 891b554aa0d6015bbeb11a02e1e668fe0296920b9ea204fd40214e92b2179bb9 | assert|test_consistency_tracker|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc i... | con.info["t_end"] | 213 | 4 |
zwicker-group/py-pde | train | 309 | 58c2625d74b66b019bd37fc0ee069012b30f06ba | train | tests/trackers/test_trackers.py | train | zwicker-group/py-pde:tests/trackers/test_trackers.py | 236 | 8 | assert | test_get_named_trackers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from p... | isinstance(tracker, cls) | modified | 72fc5766ad33749c2caea59dd503f0a018cb2fc461696eba49a9e1eb0938d6f3 | assert|test_get_named_trackers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import os import pickle import numpy as np import pytest from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE from pde.tools.misc im... | isinstance(tracker, cls) | 236 | 8 |
zwicker-group/py-pde | train | 309 | 58c2625d74b66b019bd37fc0ee069012b30f06ba | train | tests/visualization/test_movies.py | train | zwicker-group/py-pde:tests/visualization/test_movies.py | 61 | 9 | pytest.raises | test_movie_wrong_path | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import pytest
from pde.fields import ScalarField
from pde.grids import UnitGrid
from pde.pdes import DiffusionPDE
from pde.storage import MemoryStorage
from pde.visualization import movies
@pytest.mark.skipif(not movies.Movie.is_available(), reason="no... | OSError) | modified | d831f0c46fad820b7ccfe24e9e1036d50c9ca8abe78416254fa452c04c9988a6 | pytest.raises|test_movie_wrong_path|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import pytest from pde.fields import ScalarField from pde.grids import UnitGrid from pde.pdes import DiffusionPDE from pde.storage import MemoryStorage from pde.visualization import movies @pytest.mark.skipif(not movies.... | OSError) | 61 | 9 |
zwicker-group/py-pde | train | 310 | 4a10dd6ebe268c23b7f21075997725841df5573a | train | tests/fields/test_field_collections.py | test | zwicker-group/py-pde:tests/fields/test_field_collections.py | 223 | 4 | assert_* | test_from_scalar_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available
@pytest.mark.par... | (np.arange(3) + 0.5) ** 2) | modified | 20c3c85e7be7e4c60b65f2a06f272625cd40d00c05108682e4a419d2b79e6693 | assert_*|test_from_scalar_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from fixtures.fields import iter_grids from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import... | (np.arange(3) + 0.5) ** 2) | 223 | 4 |
zwicker-group/py-pde | train | 310 | 4a10dd6ebe268c23b7f21075997725841df5573a | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 578 | 9 | pytest.raises | test_dot_product | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | (TypeError, nb.errors.TypingError)) | modified | 84f4ba9b76732667abc1fe9767230b2a9c60da5090731e3702257d11ae9f1ee4 | pytest.raises|test_dot_product|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import D... | (TypeError, nb.errors.TypingError)) | 578 | 9 |
zwicker-group/py-pde | train | 310 | 4a10dd6ebe268c23b7f21075997725841df5573a | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 350 | 8 | assert_* | test_boundary_interpolation_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | bndry_val) | modified | 133e1c997cfa60235858039b8ab4402f5c240b647b1bb36f7a241be8aad25da6 | assert_*|test_boundary_interpolation_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGri... | bndry_val) | 351 | 8 |
zwicker-group/py-pde | train | 310 | 4a10dd6ebe268c23b7f21075997725841df5573a | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 125 | 4 | assert | test_vector_laplace | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available
def test_vectors_basic():
"""test some vector fields"... | (2, 16, 16) | modified | 50e75f84ad97e4e9879b4344161ad980130787b00056a3f466578667d6bab7d6 | assert|test_vector_laplace|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.tools.misc import module_available def test_vectors_basic(): """test ... | (2, 16, 16) | 125 | 4 |
zwicker-group/py-pde | train | 310 | 4a10dd6ebe268c23b7f21075997725841df5573a | train | tests/grids/operators/test_cartesian_operators.py | train | zwicker-group/py-pde:tests/grids/operators/test_cartesian_operators.py | 256 | 8 | assert_* | test_div_grad_linear | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as op... | np.zeros(32)) | modified | a411922df3e05419a77f252420c71b86bdaf038cfc835175db7ec4b88d408f6a | assert_*|test_div_grad_linear|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random import numpy as np import pytest from scipy import ndimage from pde import ( CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField, solve_poisson_equation, ) from pde.grids.operators import cartesian as... | np.zeros(32)) | 256 | 8 |
zwicker-group/py-pde | train | 310 | 4a10dd6ebe268c23b7f21075997725841df5573a | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 68 | 4 | assert | test_iter_mirror_points | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import (
GridBase,
OperatorInfo,
discretize_interval,
registered_operators,
)
def iter_grids():
"""generato... | grid_cyl._cache_hash() | modified | ef83de4a0b4b6ed2e79a696a7ec3bc3b0dc945e92ad0215b43872a221875e40b | assert|test_iter_mirror_points|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import ( GridBase, OperatorInfo, discretize_interval, registered_operators, ) def iter_grids(): """ge... | grid_cyl._cache_hash() | 69 | 4 |
zwicker-group/py-pde | train | 310 | 4a10dd6ebe268c23b7f21075997725841df5573a | train | tests/test_integration.py | train | zwicker-group/py-pde:tests/test_integration.py | 34 | 4 | assert_* | test_inhomogeneous_bcs_1 | """
Integration tests that use multiple modules together
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid
from pde.tools import misc, mpi, numba
@pytest.mark.skipif(not misc.module_a... | 0.9 * np.sin(data["data_x"])) | modified | 9e8d369ef5cde66314925a2937f88d1c177293c41b69edce5bf5f271dcfa5783 | assert_*|test_inhomogeneous_bcs_1|""" Integration tests that use multiple modules together .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, DiffusionPDE, FileStorage, PDEBase, ScalarField, UnitGrid from pde.tools import misc, mpi, numba @pytest.... | 0.9 * np.sin(data["data_x"])) | 34 | 4 |
zwicker-group/py-pde | train | 310 | 4a10dd6ebe268c23b7f21075997725841df5573a | train | tests/tools/test_misc.py | train | zwicker-group/py-pde:tests/tools/test_misc.py | 105 | 4 | assert | test_hdf_write_attributes | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import json
import os
import numpy as np
import pytest
from pde.tools import misc
def test_ensure_directory_exists(tmp_path):
"""tests the ensure_directory_exists function"""
# create temporary name
path = tmp_path / "test_ensure_directory... | {"a": 1} | modified | 28e932a628d2885b20ed3081fca97140f132d8657796c1f8280a7264fee5d0fc | assert|test_hdf_write_attributes|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import json import os import numpy as np import pytest from pde.tools import misc def test_ensure_directory_exists(tmp_path): """tests the ensure_directory_exists function""" # create temporary name path = tmp_path / "test_... | {"a": 1} | 105 | 4 |
zwicker-group/py-pde | train | 311 | 01ea2c17d5566b70a91648000e408ba9c3bea2ee | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 90 | 13 | pytest.raises | test_const | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | Exception) | modified | 2f54117d2b1a029d6b2f7069147d22f1b0228e90b952f068ece3486bacd4ebb4 | pytest.raises|test_const|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExpressio... | Exception) | 90 | 13 |
zwicker-group/py-pde | train | 311 | 01ea2c17d5566b70a91648000e408ba9c3bea2ee | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 97 | 4 | assert | test_single_arg | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | not e.constant | modified | 83b8a74d08a94da90d7c258b778d50d1ea3f7860abc62dfee15c51d963696bb6 | assert|test_single_arg|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorExpression,... | not e.constant | 97 | 4 |
zwicker-group/py-pde | train | 311 | 01ea2c17d5566b70a91648000e408ba9c3bea2ee | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 383 | 4 | assert | test_evaluate_func_vector | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | isinstance(evaluate("gradient(a)", {"a": field}), VectorField) | modified | 5787bf9ea0356f2bf6aa851188c5d79ff0f97537283ade2d277c6e4cdec37ae2 | assert|test_evaluate_func_vector|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, TensorE... | isinstance(evaluate("gradient(a)", {"a": field}), VectorField) | 383 | 4 |
zwicker-group/py-pde | train | 311 | 01ea2c17d5566b70a91648000e408ba9c3bea2ee | train | tests/tools/test_expressions.py | train | zwicker-group/py-pde:tests/tools/test_expressions.py | 428 | 4 | assert | test_evaluate_func_collection | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
eva... | isinstance(res, ScalarField) | modified | 6b1d767f4ab19226439d65fdc01d6a92fe2b824d8c1f1f42c4d68675ee7fcf54 | assert|test_evaluate_func_collection|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import logging import numba as nb import numpy as np import pytest from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.tools.expressions import ( BCDataError, ScalarExpression, Ten... | isinstance(res, ScalarField) | 428 | 4 |
zwicker-group/py-pde | train | 312 | 622e8b250ba7fefbcb521e17e45bc2d68dedc2a1 | train | tests/solvers/test_generic_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_generic_solvers.py | 28 | 4 | assert | test_solver_registration | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import (
Controller,
CrankNicolsonSolver,
ExplicitSolver,
ImplicitSolver,
ScipySolver,
regi... | solvers | added | 6c0a6a4ffe8bc2b6247dad005dc89428d219e9f0d6d50c80a5c3addcf6f13fee | assert|test_solver_registration|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid from pde.solvers import ( Controller, CrankNicolsonSolver, ExplicitSolver, ImplicitSolver, ScipySolver... | null | null | null |
zwicker-group/py-pde | train | 312 | 622e8b250ba7fefbcb521e17e45bc2d68dedc2a1 | train | tests/solvers/test_generic_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_generic_solvers.py | 52 | 4 | assert_* | test_compare_solvers | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import (
Controller,
CrankNicolsonSolver,
ExplicitSolver,
ImplicitSolver,
ScipySolver,
regi... | s2.data) | added | c55c4d6b821d047d0664f64436ba646b999042af70fc6a64510e720f3737c207 | assert_*|test_compare_solvers|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid from pde.solvers import ( Controller, CrankNicolsonSolver, ExplicitSolver, ImplicitSolver, ScipySolver, ... | null | null | null |
zwicker-group/py-pde | train | 312 | 622e8b250ba7fefbcb521e17e45bc2d68dedc2a1 | train | tests/solvers/test_generic_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_generic_solvers.py | 61 | 4 | assert | test_solvers_complex | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import (
Controller,
CrankNicolsonSolver,
ExplicitSolver,
ImplicitSolver,
ScipySolver,
regi... | c.is_complex | added | dff75333540020aa1c805de6f1a29dd2871ba5386f9da9f8d266923f0e7c9147 | assert|test_solvers_complex|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid from pde.solvers import ( Controller, CrankNicolsonSolver, ExplicitSolver, ImplicitSolver, ScipySolver, re... | null | null | null |
zwicker-group/py-pde | train | 312 | 622e8b250ba7fefbcb521e17e45bc2d68dedc2a1 | train | tests/solvers/test_generic_solvers.py | train | zwicker-group/py-pde:tests/solvers/test_generic_solvers.py | 92 | 4 | assert | test_basic_adaptive_solver | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid
from pde.solvers import (
Controller,
CrankNicolsonSolver,
ExplicitSolver,
ImplicitSolver,
ScipySolver,
regi... | 0.0005 | modified | adcd79f574d35ce8a5a29d43fc133c766285648bde7940403081dca2e69c9ef6 | assert|test_basic_adaptive_solver|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import PDE, DiffusionPDE, FieldCollection, MemoryStorage, ScalarField, UnitGrid from pde.solvers import ( Controller, CrankNicolsonSolver, ExplicitSolver, ImplicitSolver, ScipySolv... | np.allclose(storage.times, np.arange(11)) | 89 | 4 |
zwicker-group/py-pde | train | 313 | 2592f3175c88db55791a0bec706fbf4d6c2fe9a3 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 404 | 4 | assert | test_random_uniform_types | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | np.dtype( complex ) | modified | 78903aa0f9c6a330e107c7eb988ac5c85bad9615385a54bd3394efec627e5079 | assert|test_random_uniform_types|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import... | np.dtype( complex ) | 407 | 4 |
zwicker-group/py-pde | train | 313 | 2592f3175c88db55791a0bec706fbf4d6c2fe9a3 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 420 | 8 | assert | test_random_normal | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | pytest.approx(m, rel=0.1, abs=0.1) | added | d4ad711954bd1a06c128eefd08871b7f51360dfa04e55fb2ddb0393c7011ed00 | assert|test_random_normal|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base import DataFi... | null | null | null |
zwicker-group/py-pde | train | 313 | 2592f3175c88db55791a0bec706fbf4d6c2fe9a3 | train | tests/fields/test_generic_fields.py | train | zwicker-group/py-pde:tests/fields/test_generic_fields.py | 534 | 4 | assert_* | test_vector_from_scalars | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from ... | [[[0, 1]], [[2, 3]]]) | added | 23bf1742779dd3ec3685e4d1f89b579add95facae2e6a3f5253ebb37a4fcdac0 | assert_*|test_vector_from_scalars|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numba as nb import numpy as np import pytest from scipy import ndimage from fixtures.fields import iter_grids from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField from pde.fields.base impor... | null | null | null |
zwicker-group/py-pde | train | 313 | 2592f3175c88db55791a0bec706fbf4d6c2fe9a3 | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 90 | 4 | assert | test_divergence | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import mod... | (16, 16) | modified | 85581d38c6d1828b8307642d09fc1ac64ad44bfb78cf9cc0ffa2b80d40778ff7 | assert|test_divergence|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid from pde.... | (16, 16) | 89 | 4 |
zwicker-group/py-pde | train | 313 | 2592f3175c88db55791a0bec706fbf4d6c2fe9a3 | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 187 | 9 | pytest.raises | test_from_expressions | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import mod... | ValueError) | modified | 022fea4149fec348f01ae9d51a97fce98860f7f9e5160e2cc18057eea06aaf2f | pytest.raises|test_from_expressions|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymG... | ValueError) | 186 | 9 |
zwicker-group/py-pde | train | 313 | 2592f3175c88db55791a0bec706fbf4d6c2fe9a3 | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 335 | 4 | assert_* | test_interpolation_vector_fields_spherical | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import mod... | y + y * z / d / r + x * r / d) | added | 663a7f52641c800a6485a4348a9776f3050ad919733ac5f4358dc7267d6af30e | assert_*|test_interpolation_vector_fields_spherical|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.grids import CylindricalSymGrid, PolarSymGri... | null | null | null |
zwicker-group/py-pde | train | 313 | 2592f3175c88db55791a0bec706fbf4d6c2fe9a3 | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 145 | 9 | pytest.raises | test_grid_plotting | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import (
GridBase,
OperatorInfo,
discretize_interval,
registered_operators,
)
def iter_grids():
"""generato... | NotImplementedError) | added | 55e0b0379de559d1d0a17f63e7b7598cd1db16dbd66f38e170b379e72b3635e4 | pytest.raises|test_grid_plotting|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import ( GridBase, OperatorInfo, discretize_interval, registered_operators, ) def iter_grids(): """... | null | null | null |
zwicker-group/py-pde | train | 313 | 2592f3175c88db55791a0bec706fbf4d6c2fe9a3 | train | tests/grids/test_generic_grids.py | train | zwicker-group/py-pde:tests/grids/test_generic_grids.py | 193 | 12 | assert_* | test_grid_basis | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import (
GridBase,
OperatorInfo,
discretize_interval,
registered_operators,
)
def iter_grids():
"""generato... | i == j) | added | 1a3e354980ee860c117abdae20312cce57fa30aaad1c679f4501ebd065542601 | assert_*|test_grid_basis|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import itertools from copy import copy, deepcopy import numpy as np import pytest from pde import grids from pde.grids.base import ( GridBase, OperatorInfo, discretize_interval, registered_operators, ) def iter_grids(): """generato... | null | null | null |
zwicker-group/py-pde | train | 314 | 072f8adba496a96c3413edd42d1bdd89e7c44a6f | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 311 | 4 | assert_* | test_interpolation_vector_fields_cylindrical | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import mod... | vf2.data) | added | e25edf055da696b7d94b1fce35be1bb1bd66de0b0dbe7b2e9cb5013f56f21dfe | assert_*|test_interpolation_vector_fields_cylindrical|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.grids import CylindricalSymGrid, PolarSymG... | null | null | null |
zwicker-group/py-pde | train | 314 | 072f8adba496a96c3413edd42d1bdd89e7c44a6f | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 323 | 4 | assert_* | test_interpolation_vector_fields_polar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import mod... | x - y / r) | modified | 8920c50bdbe35faf9ab9267dd14af5e47775ba0c9a9fc750729ba5f8a5f6e732 | assert_*|test_interpolation_vector_fields_polar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.grids import CylindricalSymGrid, PolarSymGrid, S... | x - y / r) | 320 | 4 |
zwicker-group/py-pde | train | 314 | 072f8adba496a96c3413edd42d1bdd89e7c44a6f | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 324 | 4 | assert_* | test_interpolation_vector_fields_polar | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import mod... | y + x / r) | modified | c65a8c36f2de6b9377ba8ad3e86f7a86bff6666b2ff5761d9f58d9db38fbbd8c | assert_*|test_interpolation_vector_fields_polar|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.grids import CylindricalSymGrid, PolarSymGrid, S... | y + x / r) | 321 | 4 |
zwicker-group/py-pde | train | 314 | 072f8adba496a96c3413edd42d1bdd89e7c44a6f | train | tests/fields/test_vectorial_fields.py | train | zwicker-group/py-pde:tests/fields/test_vectorial_fields.py | 342 | 4 | assert_* | test_interpolation_vector_fields_spherical | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import mod... | z - d / r) | added | 1382c4615cfdb64c954996261362bc858136f5ec172a3b00588107c92bdef545 | assert_*|test_interpolation_vector_fields_spherical|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import numpy as np import pytest from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField from pde.fields.base import FieldBase from pde.grids import CylindricalSymGrid, PolarSymGri... | null | null | null |
zwicker-group/py-pde | train | 315 | 9420dc9050d3dc42287dcdae99fc7a539c15215f | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 106 | 4 | assert_* | test_unit_grid_1d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | np.array([0])) | modified | 2fd1beac5f3e1a76e29698786ea23c64c278c762d2a35d7b1af6646334229cb2 | assert_*|test_unit_grid_1d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import make_deriva... | np.array([0])) | 106 | 4 |
zwicker-group/py-pde | train | 315 | 9420dc9050d3dc42287dcdae99fc7a539c15215f | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 121 | 8 | assert | test_unit_grid_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | np.all(grid.polar_coordinates_real(p) < np.sqrt(8)) | modified | 6965f8876cb12515f19f3caa0c1a412e15d0a3f867b4941f3c980d334b793467 | assert|test_unit_grid_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import make_derivati... | np.all(grid.polar_coordinates_real(p) < np.sqrt(8)) | 121 | 8 |
zwicker-group/py-pde | train | 315 | 9420dc9050d3dc42287dcdae99fc7a539c15215f | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 186 | 4 | assert | test_unit_grid_3d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | np.any(large_enough) | modified | 03ea8fce57668f6e687bc23509b2269a1ead0707b5eb69f4034f82630e8c26e6 | assert|test_unit_grid_3d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import make_derivati... | np.any(large_enough) | 186 | 4 |
zwicker-group/py-pde | train | 315 | 9420dc9050d3dc42287dcdae99fc7a539c15215f | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 317 | 4 | assert | test_conversion_unit_rect_grid | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | g2.cuboid | modified | e23adf2ec20cf2990fe11a490a503ce4434a88d71e5bed7f2c9d709da75e42e1 | assert|test_conversion_unit_rect_grid|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import ... | g2.cuboid | 317 | 4 |
zwicker-group/py-pde | train | 316 | a66fb2b963a540f5aac4574ffb8a1df74206cbc6 | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 415 | 4 | assert_* | test_boundary_coordinates | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | [[0.0, 0.5], [0.0, 1.5]]) | added | 985a0f7eb96ba97dafa1dc6ee4ec207db64777fdc152ccaa98fe184ce7bf8d15 | assert_*|test_boundary_coordinates|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import mak... | null | null | null |
zwicker-group/py-pde | train | 316 | a66fb2b963a540f5aac4574ffb8a1df74206cbc6 | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 417 | 4 | assert_* | test_boundary_coordinates | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | [[0.5, 0.5], [0.5, 1.5]]) | added | 9bc087416ae3a3f0f444ece999d2ee60ffb8672df786efcb603398733a8ef6c8 | assert_*|test_boundary_coordinates|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import mak... | null | null | null |
zwicker-group/py-pde | train | 316 | a66fb2b963a540f5aac4574ffb8a1df74206cbc6 | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 420 | 4 | assert_* | test_boundary_coordinates | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | [[2.0, 0.5], [2.0, 1.5]]) | added | 1d9c8520cab088bbcb54560a1b91450492a7d7d09f3f75d8bf2aa432bb6b6ba4 | assert_*|test_boundary_coordinates|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import mak... | null | null | null |
zwicker-group/py-pde | train | 316 | a66fb2b963a540f5aac4574ffb8a1df74206cbc6 | train | tests/grids/test_cartesian_grids.py | train | zwicker-group/py-pde:tests/grids/test_cartesian_grids.py | 422 | 4 | assert_* | test_boundary_coordinates | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import random
from functools import partial
import numpy as np
import pytest
from pde import CartesianGrid, UnitGrid
from pde.grids.boundaries import Boundaries, PeriodicityError
from pde.grids.operators.common import make_derivative
def _get_cartesia... | [[1.5, 0.5], [1.5, 1.5]]) | added | df74d821413726f34eca1e9fea66815a030333d947b1175eab3899d24c099f1e | assert_*|test_boundary_coordinates|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import random from functools import partial import numpy as np import pytest from pde import CartesianGrid, UnitGrid from pde.grids.boundaries import Boundaries, PeriodicityError from pde.grids.operators.common import mak... | null | null | null |
zwicker-group/py-pde | train | 317 | 06907bf3dbba8b698ed2762611d34a46f479cc4b | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 370 | 8 | assert_* | test_boundary_interpolation_2d | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | bndry_val) | modified | 1713bd8b5e5928af95d7229680e94469b7ff7a79f096b19adf47665a3c28bfaa | assert_*|test_boundary_interpolation_2d|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGri... | bndry_val) | 368 | 8 |
zwicker-group/py-pde | train | 317 | 06907bf3dbba8b698ed2762611d34a46f479cc4b | train | tests/fields/test_scalar_fields.py | train | zwicker-group/py-pde:tests/fields/test_scalar_fields.py | 445 | 26 | pytest.approx | test_complex_dtype | """
.. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de>
"""
import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries... | np.sqrt(2)) | modified | a5bd557063a54b36336ca163f432e469f04949671d29f90b5f5e98a9b6f425b9 | pytest.approx|test_complex_dtype|""" .. codeauthor:: David Zwicker <david.zwicker@ds.mpg.de> """ import gc import numpy as np import pytest from fixtures.fields import get_cartesian_grid, iter_grids from pde.fields.base import FieldBase from pde.fields.scalar import ScalarField from pde.grids import CartesianGrid, Pola... | np.sqrt(2)) | 443 | 26 |
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