repo_id stringclasses 400
values | commit_sha stringclasses 400
values | commit_index int32 0 951 | in_repo_split stringclasses 1
value | cross_repo_split stringclasses 1
value | test_file stringlengths 7 121 | test_function stringlengths 1 108 | assertion_type stringclasses 32
values | difficulty stringclasses 8
values | context_lines int32 3 600 | prefix large_stringlengths 44 113k | target large_stringlengths 1 498 | anchor_sha stringclasses 400
values | anchor_index int32 0 951 | qna_source stringclasses 1
value |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_math.py | test_online_statistics | assert | numeric_literal | 23 | import numpy as np
import pytest
from pde.tools.math import OnlineStatistics, SmoothData1D
def test_online_statistics():
"""test OnlineStatistics class"""
stat = OnlineStatistics()
stat.add(1)
stat.add(2)
assert stat.mean == pytest.approx(1.5)
assert stat.std == pytest.approx(0.5)
assert... | 0 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_misc.py | test_preserve_scalars | assert | numeric_literal | 20 | import json
import os
import numpy as np
import pytest
from pde.tools import misc
def test_preserve_scalars():
"""test the preserve_scalars decorator"""
class Test:
@misc.preserve_scalars
def meth(self, arr):
return arr + 1
t = Test()
assert t.meth(1) == | 2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_numba.py | test_flat_idx | assert | numeric_literal | 9 | import numpy as np
from pde.tools.numba import Counter, flat_idx, jit, numba_environment
def test_flat_idx():
"""test flat_idx function"""
# testing the numpy version
assert flat_idx(2, 1) == | 2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_numba.py | test_flat_idx | assert | numeric_literal | 10 | import numpy as np
from pde.tools.numba import Counter, flat_idx, jit, numba_environment
def test_flat_idx():
"""test flat_idx function"""
# testing the numpy version
assert flat_idx(2, 1) == 2
assert flat_idx(np.arange(2), 1) == | 1 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_numba.py | test_counter | assert | numeric_literal | 9 | import numpy as np
from pde.tools.numba import Counter, flat_idx, jit, numba_environment
def test_counter():
"""test Counter implementation"""
c1 = Counter()
assert int(c1) is | 0 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_numba.py | test_counter | assert | numeric_literal | 17 | import numpy as np
from pde.tools.numba import Counter, flat_idx, jit, numba_environment
def test_counter():
"""test Counter implementation"""
c1 = Counter()
assert int(c1) is 0
assert c1 == 0
assert str(c1) == "0"
c1.increment()
assert int(c1) is 1
c1 += 2
assert int(c1) == | 3 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_output.py | test_progress_bars | assert | numeric_literal | 10 | from pde.tools import output
def test_progress_bars():
"""test progress bars"""
pb_cls = output.get_progress_bar_class()
tot = 0
for i in pb_cls(range(4)):
tot += i
assert tot == | 6 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_output.py | test_display_progress | assert | numeric_literal | 10 | from pde.tools import output
def test_display_progress(capsys):
"""test whether this works"""
for _ in output.display_progress(range(2)):
pass
out, err = capsys.readouterr()
assert out == ""
assert len(err) > | 0 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parameters.py | test_parameters | assert | numeric_literal | 29 | import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_parameters():
"""test mixing Parameterized"... | 3 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parameters.py | test_parameters | assert | numeric_literal | 35 | import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_parameters():
"""test mixing Parameterized"... | 1 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parameters.py | test_parameters | assert | numeric_literal | 39 | import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_parameters():
"""test mixing Parameterized"... | 2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parameters.py | test_convert_default_values | assert | numeric_literal | 58 | import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_convert_default_values(caplog):
"""test how... | 0 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parse_duration.py | test_parse_duration | assert | numeric_literal | 10 | from pde.tools.parse_duration import parse_duration
def test_parse_duration():
"""test function signature checks"""
def p(value):
return parse_duration(value).total_seconds()
assert p("0") == | 0 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parse_duration.py | test_parse_duration | assert | numeric_literal | 11 | from pde.tools.parse_duration import parse_duration
def test_parse_duration():
"""test function signature checks"""
def p(value):
return parse_duration(value).total_seconds()
assert p("0") == 0
assert p("1") == | 1 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_plotting_tools.py | test_plot_on_axes | assert | numeric_literal | 17 | import matplotlib.pyplot as plt
import matplotlib.testing.compare
import pytest
from pde.tools.plotting import add_scaled_colorbar, plot_on_axes, plot_on_figure
def test_plot_on_axes(tmp_path):
"""test the plot_on_axes decorator"""
@plot_on_axes
def plot(ax):
ax.plot([0, 1], [0, 1])
path = t... | 0 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_spectral.py | get_noise | assert | numeric_literal | 37 | import numpy as np
import pytest
from scipy import fftpack, stats
from pde import CartesianGrid, UnitGrid
from pde.tools.spectral import make_colored_noise
def spectral_density(data, dx=1.0):
"""calculate the power spectral density of a field
Args:
data (:class:`~numpy.ndarray`):
Data of ... | 0 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/trackers/test_interrupts.py | test_interrupt_constant | assert | numeric_literal | 21 | import numpy as np
import pytest
from pde.trackers.interrupts import (
ConstantInterrupts,
FixedInterrupts,
LogarithmicInterrupts,
RealtimeInterrupts,
parse_interrupt,
)
def test_interrupt_constant():
"""test the ConstantInterrupts class"""
ival1 = ConstantInterrupts(2)
ival2 = ival1.c... | 2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/trackers/test_interrupts.py | test_interrupt_logarithmic | assert | numeric_literal | 17 | import numpy as np
import pytest
from pde.trackers.interrupts import (
ConstantInterrupts,
FixedInterrupts,
LogarithmicInterrupts,
RealtimeInterrupts,
parse_interrupt,
)
def test_interrupt_logarithmic():
"""test the LogarithmicInterrupts class"""
ival = LogarithmicInterrupts(2, factor=2)
... | 1 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/trackers/test_interrupts.py | test_interrupt_logarithmic | assert | numeric_literal | 21 | import numpy as np
import pytest
from pde.trackers.interrupts import (
ConstantInterrupts,
FixedInterrupts,
LogarithmicInterrupts,
RealtimeInterrupts,
parse_interrupt,
)
def test_interrupt_logarithmic():
"""test the LogarithmicInterrupts class"""
ival = LogarithmicInterrupts(2, factor=2)
... | 4 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/trackers/test_interrupts.py | test_interrupt_logarithmic | assert | numeric_literal | 23 | import numpy as np
import pytest
from pde.trackers.interrupts import (
ConstantInterrupts,
FixedInterrupts,
LogarithmicInterrupts,
RealtimeInterrupts,
parse_interrupt,
)
def test_interrupt_logarithmic():
"""test the LogarithmicInterrupts class"""
ival = LogarithmicInterrupts(2, factor=2)
... | 8 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/trackers/test_trackers.py | test_plot_tracker | assert | numeric_literal | 36 | import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from pde.trackers import get_named_trackers, trackers
from pde.trackers... | 0 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_output.py | test_display_progress | assert | string_literal | 9 | from pde.tools import output
def test_display_progress(capsys):
"""test whether this works"""
for _ in output.display_progress(range(2)):
pass
out, err = capsys.readouterr()
assert out == | "" | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_field_collections.py | test_scalar_random_uniform | assert | string_literal | 14 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available
def test_scalar_random_uniform():
"""test creating collections using scalar_ra... | "c" | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_field_collections.py | test_scalar_random_uniform | assert | string_literal | 15 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available
def test_scalar_random_uniform():
"""test creating collections using scalar_ra... | "a" | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_field_collections.py | test_scalar_random_uniform | assert | string_literal | 16 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.tools.misc import module_available
def test_scalar_random_uniform():
"""test creating collections using scalar_ra... | "b" | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parameters.py | test_convert_default_values | assert_* | string_literal | 50 | import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_convert_default_values(caplog):
"""test how... | "1") | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/test_coordinates.py | test_basic_coordinates | assert | variable | 31 | import pickle
import numpy as np
import pytest
from pde.grids import coordinates
def iter_coordinates():
"""generator providing some test coordinate systems"""
yield coordinates.CartesianCoordinates(1)
yield coordinates.CartesianCoordinates(2)
yield coordinates.CartesianCoordinates(3)
yield coord... | c | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/test_generic_grids.py | test_serialization | assert | variable | 30 | import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import (
GridBase,
OperatorInfo,
discretize_interval,
registered_operators,
)
def iter_grids():
"""generator providing some test grids"""
for periodic in [True, False]:
... | g | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_generic_storages.py | test_storage_view | assert | variable | 60 | import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, MovieStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.storage.base import StorageView
from pde.tools import mpi
from pde.tools.misc impor... | j | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_cache.py | test_serialized_dict | assert | variable | 126 | import collections
import copy
import gc
import sys
import numpy as np
import pytest
from pde.tools import cache
def deep_getsizeof(obj, ids=None):
"""Find the memory footprint of a Python object
This is a recursive function that drills down a Python object graph
like a dictionary holding nested diction... | d | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_config.py | test_config | assert | variable | 12 | import pytest
from pde.tools.config import Config, environment, packages_from_requirements
def test_config():
"""test configuration system"""
c = Config()
assert c["numba.multithreading_threshold"] > 0
assert "numba.multithreading_threshold" in | c | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_expressions.py | test_const | assert | variable | 46 | import logging
import numba as nb
import numpy as np
import pytest
from pde import FieldCollection, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.tools.expressions import (
BCDataError,
ScalarExpression,
TensorExpression,
evaluate,
parse_expr_guarded,
parse_number,
)
def test_cons... | f | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_math.py | test_SmoothData1D | assert | variable | 24 | import numpy as np
import pytest
from pde.tools.math import OnlineStatistics, SmoothData1D
def test_SmoothData1D(rng):
"""test smoothing"""
x = rng.uniform(0, 1, 500)
xs = np.linspace(0, 1, 16)[1:-1]
s = SmoothData1D(x, np.ones_like(x), 0.1)
np.testing.assert_allclose(s(xs), 1)
np.testing.ass... | s | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_generic_fields.py | test_hdf_input_output | assert | variable | 32 | import numba as nb
import numpy as np
import pytest
from scipy import ndimage
from fixtures.fields import iter_grids
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.fields.base import DataFieldBase, FieldBase
from pde.grids import (
CartesianGrid,
CylindricalSymGrid,
... | f2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_scalar_fields.py | test_scalars | assert | variable | 30 | import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids._mesh import GridMesh
from pde.tools import mpi
f... | s2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_scalar_fields.py | test_scalars | assert | variable | 42 | import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids._mesh import GridMesh
from pde.tools import mpi
f... | s3 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_scalar_fields.py | test_insert_1d | pytest.approx | variable | 24 | import gc
import numpy as np
import pytest
from fixtures.fields import get_cartesian_grid, iter_grids
from pde.fields.base import FieldBase
from pde.fields.scalar import ScalarField
from pde.grids import CartesianGrid, PolarSymGrid, UnitGrid, boundaries
from pde.grids._mesh import GridMesh
from pde.tools import mpi
f... | a) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_tensorial_fields.py | test_tensors_basic | assert | variable | 58 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensors_basic(rng):
"""test some tensor calculations"""
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [3, 4])
... | t2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_vectorial_fields.py | test_vectors_basic | assert | variable | 47 | import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import module_available
def test_vectors_basic():
"""test some vector ... | v2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_vectorial_fields.py | test_interpolation_vector_fields_cylindrical | assert_* | variable | 21 | import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import module_available
def test_interpolation_vector_fields_cylindrical()... | z) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/boundaries/test_axes_boundaries.py | test_boundaries | assert | variable | 42 | import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.base import PeriodicityError
from pde.grids.boundaries.axes import BCDataError, Boundaries
from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
from pde.grids.boundaries.local impo... | b2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/boundaries/test_local_boundaries.py | test_virtual_points | assert | variable | 40 | import numpy as np
import pytest
from pde import CartesianGrid, DiffusionPDE, PolarSymGrid, ScalarField, UnitGrid
from pde.grids._mesh import GridMesh
from pde.grids.boundaries.local import (
_MPIBC,
BCBase,
BCDataError,
ExpressionValueBC,
_get_arr_1d,
registered_boundary_condition_classes,
... | up | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/test_coordinates.py | test_basic_coordinates | assert_* | variable | 29 | import pickle
import numpy as np
import pytest
from pde.grids import coordinates
def iter_coordinates():
"""generator providing some test coordinate systems"""
yield coordinates.CartesianCoordinates(1)
yield coordinates.CartesianCoordinates(2)
yield coordinates.CartesianCoordinates(3)
yield coord... | x) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_generic_storages.py | test_storing_collection | assert | variable | 53 | import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, MovieStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.storage.base import StorageView
from pde.tools import mpi
from pde.tools.misc impor... | f1 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_generic_storages.py | test_storing_collection | assert | variable | 54 | import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, MovieStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.storage.base import StorageView
from pde.tools import mpi
from pde.tools.misc impor... | f2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_generic_storages.py | test_storing_collection | assert | variable | 55 | import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, MovieStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.storage.base import StorageView
from pde.tools import mpi
from pde.tools.misc impor... | f3 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_numba.py | test_counter | assert | variable | 20 | import numpy as np
from pde.tools.numba import Counter, flat_idx, jit, numba_environment
def test_counter():
"""test Counter implementation"""
c1 = Counter()
assert int(c1) is 0
assert c1 == 0
assert str(c1) == "0"
c1.increment()
assert int(c1) is 1
c1 += 2
assert int(c1) == 3
... | c2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parameters.py | test_parameter_help | assert | variable | 37 | import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_parameter_help(monkeypatch, capsys):
"""tes... | o2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_parameters.py | test_parameter_help | assert | variable | 38 | import itertools
import logging
import math
import pickle
import numpy as np
import pytest
from pde.tools.parameters import (
DeprecatedParameter,
HideParameter,
Parameter,
Parameterized,
get_all_parameters,
sphinx_display_parameters,
)
def test_parameter_help(monkeypatch, capsys):
"""tes... | e2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/trackers/test_interrupts.py | test_interrupt_realtime | assert | variable | 18 | import numpy as np
import pytest
from pde.trackers.interrupts import (
ConstantInterrupts,
FixedInterrupts,
LogarithmicInterrupts,
RealtimeInterrupts,
parse_interrupt,
)
def test_interrupt_realtime():
"""test the RealtimeInterrupts class"""
for ival in [RealtimeInterrupts("0:01"), parse_in... | i2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_vectorial_fields.py | test_vector_bcs | assert_* | variable | 23 | import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import module_available
def test_vector_bcs():
"""test boundary condit... | s2) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/boundaries/test_axes_boundaries.py | test_boundaries | assert | variable | 37 | import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.base import PeriodicityError
from pde.grids.boundaries.axes import BCDataError, Boundaries
from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
from pde.grids.boundaries.local impo... | bc2 | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/boundaries/test_axis_boundaries.py | test_boundary_pair | assert | variable | 19 | import itertools
import pytest
from pde import UnitGrid
from pde.grids.boundaries.axis import BoundaryPair, get_boundary_axis
from pde.grids.boundaries.local import BCBase
def test_boundary_pair():
"""test setting boundary conditions for whole axis"""
g = UnitGrid([2, 3])
b = ["value", {"type": "derivati... | blo | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/boundaries/test_axis_boundaries.py | test_boundary_pair | assert | variable | 20 | import itertools
import pytest
from pde import UnitGrid
from pde.grids.boundaries.axis import BoundaryPair, get_boundary_axis
from pde.grids.boundaries.local import BCBase
def test_boundary_pair():
"""test setting boundary conditions for whole axis"""
g = UnitGrid([2, 3])
b = ["value", {"type": "derivati... | bho | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/test_coordinates.py | test_coordinate_metric | assert_* | variable | 30 | import pickle
import numpy as np
import pytest
from pde.grids import coordinates
def iter_coordinates():
"""generator providing some test coordinate systems"""
yield coordinates.CartesianCoordinates(1)
yield coordinates.CartesianCoordinates(2)
yield coordinates.CartesianCoordinates(3)
yield coord... | J2) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/test_coordinates.py | test_coordinate_metric | pytest.approx | variable | 35 | import pickle
import numpy as np
import pytest
from pde.grids import coordinates
def iter_coordinates():
"""generator providing some test coordinate systems"""
yield coordinates.CartesianCoordinates(1)
yield coordinates.CartesianCoordinates(2)
yield coordinates.CartesianCoordinates(3)
yield coord... | v2) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/test_generic_grids.py | test_coordinate_conversion | assert_* | variable | 44 | import itertools
from copy import copy, deepcopy
import numpy as np
import pytest
from pde import grids
from pde.grids.base import (
GridBase,
OperatorInfo,
discretize_interval,
registered_operators,
)
def iter_grids():
"""generator providing some test grids"""
for periodic in [True, False]:
... | p3) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_movie_storages.py | test_movie_storage_vector | assert | variable | 32 | from pathlib import Path
import numpy as np
import pytest
import pde
from pde import FileStorage, MovieStorage
from pde.tools.ffmpeg import formats
from pde.tools.misc import module_available
RESOURCES_PATH = Path(__file__).resolve().parent / "resources"
@pytest.mark.skipif(not module_available("ffmpeg"), reason="r... | dim | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/tools/test_cuboid.py | test_cuboid_nd | assert | variable | 12 | import numpy as np
import pytest
from pde.tools.cuboid import Cuboid, asanyarray_flags
def test_cuboid_nd(rng):
"""test Cuboid class in n dimensions"""
dim = rng.integers(5, 10)
size = rng.normal(size=dim)
c = Cuboid(rng.normal(size=dim), size)
assert c.dim == | dim | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/trackers/test_trackers.py | test_callback_tracker | assert_* | variable | 52 | import os
import pickle
import numpy as np
import pytest
from pde import Controller, ExplicitSolver, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import AllenCahnPDE, CahnHilliardPDE, DiffusionPDE
from pde.tools.misc import module_available
from pde.trackers import get_named_trackers, trackers
from pde.trackers... | ts) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_tensorial_fields.py | test_complex_tensors | assert | variable | 25 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
@pytest.mark.parametrize("backend", ["numba", "numpy"])
def test_complex_tensors(backend, rng):
"""test some complex tensor... | grid | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_tensorial_fields.py | test_complex_tensors | assert_* | variable | 26 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
@pytest.mark.parametrize("backend", ["numba", "numpy"])
def test_complex_tensors(backend, rng):
"""test some complex tensor... | res) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_vectorial_fields.py | test_vectors_basic | assert | variable | 25 | import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import module_available
def test_vectors_basic():
"""test some vector ... | grid | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_vectorial_fields.py | test_divergence | assert_* | variable | 20 | import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import module_available
def test_divergence():
"""test the divergence ... | div) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_vectorial_fields.py | test_outer_product | assert_* | variable | 19 | import numpy as np
import pytest
from pde import CartesianGrid, ScalarField, Tensor2Field, UnitGrid, VectorField
from pde.fields.base import FieldBase
from pde.grids import CylindricalSymGrid, PolarSymGrid, SphericalSymGrid
from pde.tools.misc import module_available
def test_outer_product():
"""test outer produc... | res) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/boundaries/test_axes_boundaries.py | test_boundaries | assert | variable | 26 | import itertools
import numpy as np
import pytest
from pde import ScalarField, UnitGrid
from pde.grids.base import PeriodicityError
from pde.grids.boundaries.axes import BCDataError, Boundaries
from pde.grids.boundaries.axis import BoundaryPair, BoundaryPeriodic, get_boundary_axis
from pde.grids.boundaries.local impo... | bc_x | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cartesian_operators.py | test_laplace_2d | assert_* | variable | 53 | import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as ops
from pde.grids.operators.common import make_laplace_from_matrix... | res) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cylindrical_operators.py | test_laplacian_field_cyl | assert_* | variable | 24 | import numpy as np
import pytest
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.cylindrical_sym import _get_laplace_matrix
def test_l... | res) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/pdes/test_diffusion_pdes.py | test_diffusion_single | assert | variable | 20 | import numpy as np
import pytest
from scipy import stats
from pde import CartesianGrid, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
def test_diffusion_single(rng):
"""test some methods of the simple diffusion model"""
eq = DiffusionPDE()
assert isinstance(str(eq), str)
assert isinstance(repr(eq... | grid | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/pdes/test_generic_pdes.py | test_pde_consistency | assert | variable | 29 | import numpy as np
import pytest
from pde import ScalarField, UnitGrid, pdes
@pytest.mark.parametrize("dim", [1, 2])
@pytest.mark.parametrize(
"pde_class",
[
pdes.AllenCahnPDE,
pdes.CahnHilliardPDE,
pdes.DiffusionPDE,
pdes.KPZInterfacePDE,
pdes.KuramotoSivashinskyPDE,
... | grid | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/pdes/test_generic_pdes.py | test_pde_consistency | assert_* | variable | 32 | import numpy as np
import pytest
from pde import ScalarField, UnitGrid, pdes
@pytest.mark.parametrize("dim", [1, 2])
@pytest.mark.parametrize(
"pde_class",
[
pdes.AllenCahnPDE,
pdes.CahnHilliardPDE,
pdes.DiffusionPDE,
pdes.KPZInterfacePDE,
pdes.KuramotoSivashinskyPDE,
... | res) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/pdes/test_pdes_mpi.py | test_pde_complex_bcs_mpi | assert_* | variable | 28 | import numpy as np
import pytest
from pde import PDE, DiffusionPDE, grids
from pde.fields import ScalarField, VectorField
from pde.tools import mpi
@pytest.mark.multiprocessing
@pytest.mark.parametrize("dim", [1, 2, 3])
@pytest.mark.parametrize("backend", ["numpy", "numba"])
def test_pde_complex_bcs_mpi(dim, backend,... | res) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/pdes/test_wave_pdes.py | test_wave_consistency | assert | variable | 18 | import numpy as np
import pytest
from pde import PDE, ScalarField, UnitGrid, WavePDE
@pytest.mark.parametrize("dim", [1, 2])
def test_wave_consistency(dim, rng):
"""test some methods of the wave model"""
eq = WavePDE()
assert isinstance(str(eq), str)
assert isinstance(repr(eq), str)
# compare num... | grid | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_movie_storages.py | test_movie_storage_scalar | assert | variable | 37 | from pathlib import Path
import numpy as np
import pytest
import pde
from pde import FileStorage, MovieStorage
from pde.tools.ffmpeg import formats
from pde.tools.misc import module_available
RESOURCES_PATH = Path(__file__).resolve().parent / "resources"
@pytest.mark.skipif(not module_available("ffmpeg"), reason="r... | grid | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cartesian_operators.py | test_gradient_cart | assert_* | variable | 50 | import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as ops
from pde.grids.operators.common import make_laplace_from_matrix... | res2) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/test_coordinates.py | test_basic_coordinates | assert | complex_expr | 25 | import pickle
import numpy as np
import pytest
from pde.grids import coordinates
def iter_coordinates():
"""generator providing some test coordinate systems"""
yield coordinates.CartesianCoordinates(1)
yield coordinates.CartesianCoordinates(2)
yield coordinates.CartesianCoordinates(3)
yield coord... | c.dim | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_generic_storages.py | test_storage_copy | assert | complex_expr | 55 | import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, MovieStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.storage.base import StorageView
from pde.tools import mpi
from pde.tools.misc impor... | s1[0] | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_generic_storages.py | test_storage_copy | assert | complex_expr | 56 | import functools
import platform
import numpy as np
import pytest
from pde import DiffusionPDE, FileStorage, MemoryStorage, MovieStorage, UnitGrid
from pde.fields import FieldCollection, ScalarField, Tensor2Field, VectorField
from pde.storage.base import StorageView
from pde.tools import mpi
from pde.tools.misc impor... | s1[1] | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_tensorial_fields.py | test_insert_tensor | assert_* | complex_expr | 27 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
@pytest.mark.parametrize("grid", iter_grids())
@pytest.mark.parametrize("compiled", [True, False])
def test_insert_tensor(grid,... | 2 * a) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_tensorial_fields.py | test_from_expressions | assert_* | complex_expr | 17 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_from_expressions():
"""test initializing tensor fields with expressions"""
grid = UnitGrid([4, 4])
tf = Te... | xs**2) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/boundaries/test_axis_boundaries.py | test_boundary_pair | assert | complex_expr | 45 | import itertools
import pytest
from pde import UnitGrid
from pde.grids.boundaries.axis import BoundaryPair, get_boundary_axis
from pde.grids.boundaries.local import BCBase
def test_boundary_pair():
"""test setting boundary conditions for whole axis"""
g = UnitGrid([2, 3])
b = ["value", {"type": "derivati... | bc1[0] | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/boundaries/test_axis_boundaries.py | test_boundary_pair | assert | complex_expr | 47 | import itertools
import pytest
from pde import UnitGrid
from pde.grids.boundaries.axis import BoundaryPair, get_boundary_axis
from pde.grids.boundaries.local import BCBase
def test_boundary_pair():
"""test setting boundary conditions for whole axis"""
g = UnitGrid([2, 3])
b = ["value", {"type": "derivati... | bc1[1] | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_movie_storages.py | test_stored_files | assert | complex_expr | 25 | from pathlib import Path
import numpy as np
import pytest
import pde
from pde import FileStorage, MovieStorage
from pde.tools.ffmpeg import formats
from pde.tools.misc import module_available
RESOURCES_PATH = Path(__file__).resolve().parent / "resources"
@pytest.mark.skipif(not module_available("ffmpeg"), reason="r... | b.grid | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cartesian_operators.py | test_poisson_solver_cartesian | assert_* | complex_expr | 52 | import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as ops
from pde.grids.operators.common import make_laplace_from_matrix... | d.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cylindrical_operators.py | test_poisson_solver_cylindrical | assert_* | complex_expr | 28 | import numpy as np
import pytest
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.cylindrical_sym import _get_laplace_matrix
@pytest.ma... | d.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_polar_operators.py | test_poisson_solver_polar | assert_* | complex_expr | 26 | import numpy as np
import pytest
from pde import (
CartesianGrid,
PolarSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.polar_sym import _get_laplace_matrix
@pytest.mark.parametri... | d.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_spherical_operators.py | test_poisson_solver_spherical | assert_* | complex_expr | 25 | import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.spherical_sym import _get_laplace_matrix
@pytest.mark.p... | d.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/solvers/test_explicit_solvers.py | test_solvers_time_dependent | assert | complex_expr | 30 | import numpy as np
import pytest
from pde import PDE, DiffusionPDE, MemoryStorage, ScalarField, UnitGrid
from pde.pdes import PDEBase
from pde.solvers import Controller, ExplicitMPISolver, ExplicitSolver
from pde.tools import mpi
@pytest.mark.parametrize("scheme", ["euler", "runge-kutta"])
@pytest.mark.parametrize("a... | 20 / dt | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/storage/test_movie_storages.py | test_stored_files | assert_* | complex_expr | 26 | from pathlib import Path
import numpy as np
import pytest
import pde
from pde import FileStorage, MovieStorage
from pde.tools.ffmpeg import formats
from pde.tools.misc import module_available
RESOURCES_PATH = Path(__file__).resolve().parent / "resources"
@pytest.mark.skipif(not module_available("ffmpeg"), reason="r... | b.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_tensorial_fields.py | test_tensor_symmetrize | assert_* | complex_expr | 28 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensor_symmetrize():
"""test advanced tensor calculations"""
grid = CartesianGrid([[0.1, 0.3], [-2, 3]], [2, 2... | ts.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_tensorial_fields.py | test_tensor_invariants | assert_* | complex_expr | 21 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_tensor_invariants(rng):
"""test the invariants"""
# dim == 1
f = Tensor2Field.random_uniform(UnitGrid([3])... | invs[2]) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/fields/test_tensorial_fields.py | test_from_expressions | assert_* | complex_expr | 18 | import numpy as np
import pytest
from fixtures.fields import iter_grids
from pde import CartesianGrid, PolarSymGrid, ScalarField, Tensor2Field, UnitGrid
from pde.fields.base import FieldBase
def test_from_expressions():
"""test initializing tensor fields with expressions"""
grid = UnitGrid([4, 4])
tf = Te... | xs * ys) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cartesian_operators.py | test_laplace_1d | assert_* | complex_expr | 48 | import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as ops
from pde.grids.operators.common import make_laplace_from_matrix... | l2.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cartesian_operators.py | test_gradient_squared_cart | assert_* | complex_expr | 52 | import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as ops
from pde.grids.operators.common import make_laplace_from_matrix... | s2.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cartesian_operators.py | test_gradient_squared_cart | assert_* | complex_expr | 54 | import random
import numpy as np
import pytest
from scipy import ndimage
from pde import (
CartesianGrid,
ScalarField,
Tensor2Field,
UnitGrid,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators import cartesian as ops
from pde.grids.operators.common import make_laplace_from_matrix... | s3.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cylindrical_operators.py | test_gradient_squared_cyl | assert_* | complex_expr | 22 | import numpy as np
import pytest
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.cylindrical_sym import _get_laplace_matrix
def test_g... | s2.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_cylindrical_operators.py | test_gradient_squared_cyl | assert_* | complex_expr | 24 | import numpy as np
import pytest
from pde import (
CartesianGrid,
CylindricalSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.cylindrical_sym import _get_laplace_matrix
def test_g... | s3.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_polar_operators.py | test_gradient_squared_polar | assert_* | complex_expr | 23 | import numpy as np
import pytest
from pde import (
CartesianGrid,
PolarSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.polar_sym import _get_laplace_matrix
@pytest.mark.parametri... | s2.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_polar_operators.py | test_gradient_squared_polar | assert_* | complex_expr | 25 | import numpy as np
import pytest
from pde import (
CartesianGrid,
PolarSymGrid,
ScalarField,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.polar_sym import _get_laplace_matrix
@pytest.mark.parametri... | s3.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
zwicker-group/py-pde | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | train | train | tests/grids/operators/test_spherical_operators.py | test_gradient_squared | assert_* | complex_expr | 23 | import numpy as np
import pytest
from pde import (
CartesianGrid,
ScalarField,
SphericalSymGrid,
Tensor2Field,
VectorField,
solve_poisson_equation,
)
from pde.grids.operators.common import make_laplace_from_matrix
from pde.grids.operators.spherical_sym import _get_laplace_matrix
@pytest.mark.p... | s2.data) | 15b49f26a58ddccbba9109636dc37831846834a7 | 331 | v2_extractor_at_anchor |
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